Last updated on 2026-04-19 01:51:31 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| biomartr | 14 | ||
| myTAI | 2 | 3 | 9 |
| philentropy | 1 | 13 |
Current CRAN status: OK: 14
Current CRAN status: ERROR: 2, NOTE: 3, OK: 9
Version: 2.3.5
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64
Version: 2.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'myTAI.Rmd' using rmarkdown
--- finished re-building 'myTAI.Rmd'
--- re-building 'other-strata.Rmd' using rmarkdown
--- finished re-building 'other-strata.Rmd'
--- re-building 'phylo-expression-object.Rmd' using rmarkdown
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
|
| | 0%
|
|======================================================================| 100%
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building 'phylo-expression-object.Rmd'
--- re-building 'phylostratigraphy.Rmd' using rmarkdown
--- finished re-building 'phylostratigraphy.Rmd'
--- re-building 'tai-breaker.Rmd' using rmarkdown
--- finished re-building 'tai-breaker.Rmd'
--- re-building 'tai-gallery.Rmd' using rmarkdown
--- finished re-building 'tai-gallery.Rmd'
--- re-building 'tai-stats.Rmd' using rmarkdown
--- finished re-building 'tai-stats.Rmd'
--- re-building 'tai-transform.Rmd' using rmarkdown
--- finished re-building 'tai-transform.Rmd'
--- re-building 'taxonomy.Rmd' using rmarkdown
Quitting from taxonomy.Rmd:307-311 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Gateway Timeout (HTTP 504)
---
Backtrace:
▆
1. └─global taxonomy(organism = "Arabidopsis", db = "itis", output = "children")
2. ├─base::as.data.frame(taxize::children(organism, db = db)[[1]])
3. ├─taxize::children(organism, db = db)
4. └─taxize:::children.default(organism, db = db)
5. └─taxize:::process_children_ids(...)
6. └─eval(fxn)(input, ...)
7. └─ritis::terms(sci_com[i], what = searchtype, ...)
8. └─base::lapply(query, fun, wt = wt, raw = raw, ...)
9. └─ritis (local) FUN(X[[i]], ...)
10. └─ritis:::itis_GET(path, list(srchKey = x), wt, ...)
11. └─tt$raise_for_status()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'taxonomy.Rmd' failed with diagnostics:
Gateway Timeout (HTTP 504)
--- failed re-building 'taxonomy.Rmd'
SUMMARY: processing the following file failed:
'taxonomy.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 2.3.5
Check: installed package size
Result: NOTE
installed size is 11.0Mb
sub-directories of 1Mb or more:
doc 6.1Mb
libs 3.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 13
Version: 0.10.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64