Last updated on 2026-01-26 01:51:45 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [123s/62s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-26 10:47:37.698994: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:37.699317: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:37.704151: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:37.711513: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:37.723085: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:37.723251: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:37.726139: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:37.732987: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:37.741889: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:37.742116: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:37.747539: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:37.764741: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:37.76524: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:37.772709: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:37.772855: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:37.778295: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:37.796824: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:37.797341: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:37.824232: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:37.82441: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:37.829311: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:37.863913: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:37.874214: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:37.874433: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:37.883847: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:37.970225: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:37.971634: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:38.011905: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.012074: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.014975: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.021342: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.030627: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.030867: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.043727: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.060816: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:38.061484: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:38.10035: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.100507: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.102849: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.108227: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.120286: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.120486: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.125489: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.140706: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:38.141105: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:38.162451: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.162622: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.16541: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.172034: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.186692: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.186926: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.19195: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.207964: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:38.208472: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:38.238186: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.238386: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.242092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.249401: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.264757: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.264976: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.27018: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.285584: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:38.285922: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:38.30722: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.307401: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.310182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.316586: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.330991: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.331199: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.336148: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.351003: embedding
> test_pipeop_isomap.R: 2026-01-26 10:47:38.35146: DONE
> test_pipeop_isomap.R: 2026-01-26 10:47:38.385928: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.386156: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.38898: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.395645: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.420303: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.420501: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.423492: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.430793: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:47:38.438239: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:47:38.43838: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:47:38.441154: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:47:38.447696: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.5870157')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [318s/389s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-25 18:45:04.969374: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:04.969935: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:04.996691: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:05.052929: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:05.149151: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:05.149453: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:05.176012: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:05.224142: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:05.289987: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:05.290459: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:05.324022: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:05.42748: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:05.428685: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:05.479291: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:05.479594: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:05.53033: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:05.630081: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:05.631312: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:05.797314: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:05.797636: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:05.873068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:06.107629: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:06.188705: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:06.190316: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:06.272728: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:06.787482: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:06.791129: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:07.07815: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:07.078445: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:07.103996: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:07.138527: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:07.212233: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:07.212678: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:07.242699: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:07.348023: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:07.350274: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:07.674628: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:07.674951: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:07.698435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:07.73276: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:07.842204: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:07.842631: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:07.877578: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:07.981918: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:08.006576: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:08.161809: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:08.162108: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:08.187045: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:08.236082: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:08.333314: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:08.343126: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:08.387073: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:08.50357: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:08.504701: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:08.656568: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:08.656875: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:08.663647: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:08.71223: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:08.823618: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:08.82408: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:08.850845: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:08.959181: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:08.96038: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:09.118485: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:09.1188: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:09.137052: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:09.181721: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:09.286039: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 18:45:09.28646: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:09.322313: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:09.443469: embedding
> test_pipeop_isomap.R: 2026-01-25 18:45:09.444618: DONE
> test_pipeop_isomap.R: 2026-01-25 18:45:09.617043: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:09.61733: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:09.643667: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:09.693311: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:09.887677: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:09.887977: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:09.91757: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:09.969853: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 18:45:10.003665: Isomap START
> test_pipeop_isomap.R: 2026-01-25 18:45:10.003962: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 18:45:10.025919: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 18:45:10.085019: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-23 21:16:27.219948: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.220987: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.236572: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.260744: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.378932: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.379508: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.387638: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.402754: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.446137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.447119: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.468526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.51888: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.520702: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.550695: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.551402: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.566254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.61067: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.612635: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.744686: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.745308: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.765965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.876698: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.9247: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.925702: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.98113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.212569: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.217711: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.454488: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.455112: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.466487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.489004: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:28.542654: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.543563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.567087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.616799: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.618684: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.879887: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.880703: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.893513: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.916254: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.00898: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.010139: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.033639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.084773: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.0866: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225234: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225898: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.238092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.260775: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.333826: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.334764: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.35337: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.39555: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.397577: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507543: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507999: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.533037: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.552449: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627045: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627846: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.64328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.689077: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.690683: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810192: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.823068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.845674: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.92462: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.925551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.949145: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.000386: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:30.00223: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140067: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.167155: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.189673: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290376: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290869: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.299982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.315442: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.34708: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.347551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.357353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.378585: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13