Last updated on 2024-11-12 01:48:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1.0 | 26.10 | 618.16 | 644.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1.0 | 17.59 | 290.02 | 307.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1.0 | 893.14 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1.0 | 1089.09 | OK | |||
| r-devel-windows-x86_64 | 1.1.1.0 | 26.00 | 568.00 | 594.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1.0 | 25.42 | 577.82 | 603.24 | NOTE | |
| r-release-linux-x86_64 | 1.1.1.0 | 26.86 | 578.26 | 605.12 | NOTE | |
| r-release-macos-arm64 | 1.1.1.0 | 201.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1.1.0 | 350.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.1.0 | 25.00 | 480.00 | 505.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.1.0 | 272.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.1.0 | 367.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.1.0 | 32.00 | 535.00 | 567.00 | NOTE |
Version: 1.1.1.0
Check: examples
Result: ERROR
Running examples in ‘pcvr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: conjugate
> ### Title: Bayesian testing using conjugate priors and method of moments
> ### for single or multi value traits.
> ### Aliases: conjugate
> ### Keywords: ROPE bayesian conjugate priors
>
> ### ** Examples
>
> mv_ln <- mvSim(
+ dists = list(
+ rlnorm = list(meanlog = log(130), sdlog = log(1.2)),
+ rlnorm = list(meanlog = log(100), sdlog = log(1.3))
+ ),
+ n_samples = 30
+ )
>
> # lognormal mv
> ln_mv_ex <- conjugate(
+ s1 = mv_ln[1:30, -1], s2 = mv_ln[31:60, -1], method = "lognormal",
+ priors = list(mu = 5, sd = 2),
+ plot = FALSE, rope_range = c(-40, 40), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal", support = NULL
+ )
>
> # lognormal sv
> ln_sv_ex <- conjugate(
+ s1 = rlnorm(100, log(130), log(1.3)), s2 = rlnorm(100, log(100), log(1.6)),
+ method = "lognormal",
+ priors = list(mu = 5, sd = 2),
+ plot = FALSE, rope_range = NULL, rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal", support = NULL
+ )
>
> # Z test mv example
>
> mv_gauss <- mvSim(
+ dists = list(
+ rnorm = list(mean = 50, sd = 10),
+ rnorm = list(mean = 60, sd = 12)
+ ),
+ n_samples = 30
+ )
>
> gauss_mv_ex <- conjugate(
+ s1 = mv_gauss[1:30, -1], s2 = mv_gauss[31:60, -1], method = "gaussian",
+ priors = list(mu = 30, n = 1, s2 = 100),
+ plot = FALSE, rope_range = c(-25, 25), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal", support = NULL
+ )
>
> # T test sv example
>
> gaussianMeans_sv_ex <- conjugate(
+ s1 = rnorm(10, 50, 10), s2 = rnorm(10, 60, 12), method = "t",
+ priors = list(mu = 30, n = 1, s2 = 100),
+ plot = FALSE, rope_range = c(-5, 8), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal", support = NULL
+ )
>
> # beta mv example
>
> set.seed(123)
> mv_beta <- mvSim(
+ dists = list(
+ rbeta = list(shape1 = 5, shape2 = 8),
+ rbeta = list(shape1 = 10, shape2 = 10)
+ ),
+ n_samples = c(30, 20)
+ )
>
> beta_mv_ex <- conjugate(
+ s1 = mv_beta[1:30, -1], s2 = mv_beta[31:50, -1], method = "beta",
+ priors = list(a = 0.5, b = 0.5),
+ plot = FALSE, rope_range = c(-0.1, 0.1), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal"
+ )
>
> # beta sv example
>
> beta_sv_ex <- conjugate(
+ s1 = rbeta(20, 5, 5), s2 = rbeta(20, 8, 5), method = "beta",
+ priors = list(a = 0.5, b = 0.5),
+ plot = FALSE, rope_range = c(-0.1, 0.1), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal"
+ )
>
> # binomial sv example
> # note that specifying trials = 20 would also work
> # and the number of trials will be recycled to the length of successes
>
> binomial_sv_ex <- conjugate(
+ s1 = list(successes = c(15, 14, 16, 11), trials = c(20, 20, 20, 20)),
+ s2 = list(successes = c(7, 8, 10, 5), trials = c(20, 20, 20, 20)), method = "binomial",
+ priors = list(a = 0.5, b = 0.5),
+ plot = FALSE, rope_range = c(-0.1, 0.1), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal"
+ )
>
> # poisson sv example
>
> poisson_sv_ex <- conjugate(
+ s1 = rpois(20, 10), s2 = rpois(20, 8), method = "poisson",
+ priors = list(a = 0.5, b = 0.5),
+ plot = FALSE, rope_range = c(-1, 1), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal"
+ )
>
> # negative binomial sv example
> # knowing r (required number of successes) is an important caveat for this method.
> # in the current implementation we suggest using the poisson method for data such as leaf counts
>
> negbin_sv_ex <- conjugate(
+ s1 = rnbinom(20, 10, 0.5), s2 = rnbinom(20, 10, 0.25), method = "negbin",
+ priors = list(r = 10, a = 0.5, b = 0.5),
+ plot = FALSE, rope_range = c(-1, 1), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal"
+ )
>
> # von mises mv example
>
> mv_gauss <- mvSim(
+ dists = list(
+ rnorm = list(mean = 50, sd = 10),
+ rnorm = list(mean = 60, sd = 12)
+ ),
+ n_samples = c(30, 40)
+ )
> vm1_ex <- conjugate(
+ s1 = mv_gauss[1:30, -1],
+ s2 = mv_gauss[31:70, -1],
+ method = "vonmises",
+ priors = list(mu = 45, kappa = 1, boundary = c(0, 180), known_kappa = 1, n = 1),
+ plot = FALSE, rope_range = c(-1, 1), rope_ci = 0.89,
+ cred.int.level = 0.89, hypothesis = "equal"
+ )
Error in loadNamespace(x) : there is no package called ‘brms’
Calls: conjugate ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [75s/85s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pcvr)
>
> test_check("pcvr")
params are not uniform length, values are being recycled to fit max length
logistic nls model:
pcvr formula variables:
Outcome: y
X: time
Individual: id
Group: group
Model Formula:
y ~ A[group]/(1 + exp((B[group] - time)/C[group]))
<environment: 0x560696168600>
Data:
id group time y group_numericLabel
1 id_1 a 1 6.478453 1
2 id_1 a 2 8.520418 1
3 id_1 a 3 11.166817 1
...
(1000 rows)logistic nlme model:
pcvr formula variables:
Outcome: y
X: time
Individual: id
Group: group
Model Formula:
y ~ A/(1 + exp((B - time)/C))
<environment: 0x56069b2e24e8>
A ~ 0 + group
B ~ 0 + group
C ~ 0 + group
Data:
id group time y group_numericLabel autocor
1 id_1 a 1 6.478453 1 a.id_1
2 id_1 a 2 8.520418 1 a.id_1
3 id_1 a 3 11.166817 1 a.id_1
...
(1000 rows)[ FAIL 45 | WARN 0 | SKIP 59 | PASS 739 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test-growthModels.R:153:3', 'test-growthModels.R:174:3',
'test-growthModels.R:192:3', 'test-growthModels.R:213:3',
'test-growthModels.R:231:3', 'test-growthModels.R:252:3',
'test-growthModels.R:281:3', 'test-growthModels.R:299:3',
'test-growthModels.R:317:3', 'test-growthModels.R:335:3',
'test-growthModels.R:357:3', 'test-growthModels.R:369:3',
'test-growthModels.R:381:3', 'test-growthModels.R:393:3',
'test-growthModels.R:415:3', 'test-growthModels.R:433:3',
'test-growthModels.R:450:3', 'test-growthModels.R:467:3',
'test-growthModels.R:489:3', 'test-growthModels.R:503:3',
'test-growthModels.R:535:3', 'test-growthModels.R:564:3',
'test-growthModels.R:584:3', 'test-growthModels.R:599:3',
'test-growthModels.R:625:3', 'test-growthModels.R:642:3',
'test-growthModels.R:664:3', 'test-growthModels.R:681:3',
'test-growthModels.R:696:3', 'test-growthModels.R:713:3',
'test-long_mv_workflow.R:2:3', 'test-long_sv_workflow.R:3:3',
'test-multiGroupingModels.R:111:3', 'test-multiGroupingModels.R:130:3',
'test-multiGroupingModels.R:149:3', 'test-mvSSModels.R:62:3',
'test-mvSSModels.R:76:3', 'test-mvSSModels.R:138:3',
'test-mvSSModels.R:150:3', 'test-readers.R:31:3', 'test-readers.R:40:3',
'test-wide_mv_workflow.R:3:3', 'test-wide_sv_workflow.R:3:3'
• brms cannot be loaded (16): 'test-brmsInterceptModels.R:2:3',
'test-brmsInterceptModels.R:28:3', 'test-brmsInterceptModels.R:52:3',
'test-brmsInterceptModels.R:79:3', 'test-brmsInterceptModels.R:105:3',
'test-brmsModels.R:8:3', 'test-brmsModels.R:124:3',
'test-brmsModels.R:149:3', 'test-brmsModels.R:177:3',
'test-brmsModels.R:205:3', 'test-brmsModels.R:257:3',
'test-brmsModels.R:281:3', 'test-multiGroupingModels.R:15:3',
'test-mvSSModels.R:29:3', 'test-mvSSModels.R:45:3', 'test-mvSSModels.R:124:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-brmSSHelpers.R:11:3'): prior specification in brmSSHelpers works for all inputs ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr::growthSS(...) at test-brmSSHelpers.R:11:3
2. │ └─pcvr:::.brmSS(...)
3. │ └─pcvr:::.brmFamilyHelper(model)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:92:3'): brms form logistic works ────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_logistic(...) at test-brmSSHelpers.R:92:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:119:3'): brms form gompertz works ───────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_gompertz(...) at test-brmSSHelpers.R:119:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:146:3'): brms form gumbel works ─────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_gumbel(...) at test-brmSSHelpers.R:146:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:173:3'): brms form frechet works ────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_frechet(...) at test-brmSSHelpers.R:173:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:200:3'): brms form weibull works ────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_weibull(...) at test-brmSSHelpers.R:200:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:227:3'): brms form double logistic works ────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_doublelogistic(...) at test-brmSSHelpers.R:227:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:254:3'): brms form double gompertz works ────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_doublegompertz(...) at test-brmSSHelpers.R:254:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:281:3'): brms form monomolecular works ──────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_monomolecular(...) at test-brmSSHelpers.R:281:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:308:3'): brms form exponential works ────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_exponential(...) at test-brmSSHelpers.R:308:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:335:3'): brms form power law works ──────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_powerlaw(...) at test-brmSSHelpers.R:335:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:368:3'): brms form linear works ─────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_linear(...) at test-brmSSHelpers.R:368:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:395:3'): brms form logarithmic works ────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_logarithmic(...) at test-brmSSHelpers.R:395:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:449:3'): brms form bragg works ──────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_bragg(...) at test-brmSSHelpers.R:449:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:476:3'): brms form lorentz works ────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_lorentz(...) at test-brmSSHelpers.R:476:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmSSHelpers.R:503:3'): brms form beta works ───────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.brms_form_beta(...) at test-brmSSHelpers.R:503:3
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-brmsModels.R:308:3'): .brmSurvSS options all work ──────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-brmsModels.R:308:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr:::.brmsSurvSS(...)
4. │ └─pcvr:::.brmsMakeSurvPriors(priors, out_df, makeSurvDataRet, form_ret)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-conjugate_mv_vs_sv.R:11:3'): conjugate vonmises method is consistent for SV and MV ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.conjugate.mv.sv.testing(method, prior, generating) at test-conjugate_mv_vs_sv.R:11:3
2. │ └─pcvr::conjugate(...)
3. │ └─base::lapply(...)
4. │ └─pcvr (local) FUN(X[[i]], ...)
5. │ └─pcvr (local) matched_fun(sample, prior, plot, support, cred.int.level)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-conjugate_mv_vs_sv.R:46:3'): conjugate vonmises2 method is consistent for SV and MV ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr:::.conjugate.mv.sv.testing(method, prior, generating) at test-conjugate_mv_vs_sv.R:46:3
2. │ └─pcvr::conjugate(...)
3. │ └─base::lapply(...)
4. │ └─pcvr (local) FUN(X[[i]], ...)
5. │ └─pcvr (local) matched_fun(sample, prior, plot, support, cred.int.level)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthModels.R:138:3'): Test Logistic brms model setup ─────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr::growthSS(...) at test-growthModels.R:138:3
2. │ └─pcvr:::.brmSS(...)
3. │ └─pcvr:::.brmFamilyHelper(model)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:32:3'): GrowthSS Helpers for double logistic Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:32:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:68:3'): GrowthSS Helpers for double gompertz Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:68:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:97:3'): GrowthSS Helpers for Logistic Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:97:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:126:3'): GrowthSS Helpers for Gompertz Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:126:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:155:3'): GrowthSS Helpers for Weibull Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:155:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:184:3'): GrowthSS Helpers for Gumbel Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:184:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:213:3'): GrowthSS Helpers for Frechet Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:213:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:242:3'): GrowthSS Helpers for Monomolecular Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:242:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:271:3'): GrowthSS Helpers for Power Law Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:271:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:300:3'): GrowthSS Helpers for Exponential Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:300:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:329:3'): GrowthSS Helpers for Logarithmic Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:329:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:358:3'): GrowthSS Helpers for linear Data work ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:358:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:387:3'): GrowthSS Helpers for gams work ─────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:387:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:425:3'): GrowthSS Helpers for bragg DRMs run ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:425:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:453:3'): GrowthSS Helpers for lorentz DRMs run ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:453:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:481:3'): GrowthSS Helpers for beta DRMs run ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:481:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:499:3'): .brmSS messages about complex models ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-growthSS_helpers.R:499:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─pcvr::growthSS(...)
8. │ └─pcvr:::.brmSS(...)
9. │ └─pcvr:::.brmFamilyHelper(model)
10. └─base::loadNamespace(x)
11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:517:3'): .brmSS assembles decay model ───────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr::growthSS(...) at test-growthSS_helpers.R:517:3
2. │ └─pcvr:::.brmSS(...)
3. │ └─pcvr:::.brmFamilyHelper(model)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:537:3'): .brmSS warns about ambiguous hierarchy ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-growthSS_helpers.R:537:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─pcvr::growthSS(...)
8. │ └─pcvr:::.brmSS(...)
9. │ └─pcvr:::.brmFamilyHelper(model)
10. └─base::loadNamespace(x)
11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-growthSS_helpers.R:551:3'): .brmSS handles a truncated response ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-growthSS_helpers.R:551:3
2. │ └─base::withCallingHandlers(...)
3. ├─pcvr::growthSS(...)
4. │ └─pcvr:::.brmSS(...)
5. │ └─pcvr:::.brmFamilyHelper(model)
6. └─base::loadNamespace(x)
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-mv-conjugate.R:159:3'): conjugate multi value von mises (1) works ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr::conjugate(...) at test-mv-conjugate.R:159:3
2. │ └─base::lapply(...)
3. │ └─pcvr (local) FUN(X[[i]], ...)
4. │ └─pcvr (local) matched_fun(sample, prior, plot, support, cred.int.level)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-mv-conjugate.R:185:3'): conjugate multi value von mises (2) works ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr::conjugate(...) at test-mv-conjugate.R:185:3
2. │ └─base::lapply(...)
3. │ └─pcvr (local) FUN(X[[i]], ...)
4. │ └─pcvr (local) matched_fun(sample, prior, plot, support, cred.int.level)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-survSS_helpers.R:18:3'): .brmsMakeSurvPriors in survSS returns priors correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-survSS_helpers.R:18:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-sv-conjugate.R:242:3'): conjugate single value von mises (1) works ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-sv-conjugate.R:242:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-sv-conjugate.R:271:3'): conjugate single value von mises (2) works ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'brms'
Backtrace:
▆
1. ├─pcvr::conjugate(...) at test-sv-conjugate.R:271:3
2. │ └─base::lapply(...)
3. │ └─pcvr (local) FUN(X[[i]], ...)
4. │ └─pcvr (local) matched_fun(sample, prior, plot, support, cred.int.level)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 45 | WARN 0 | SKIP 59 | PASS 739 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bellwether.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5836 bytes
Input file size = 6694 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5177
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5152
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5152
Output IDAT size = 5152 bytes (684 bytes decrease)
Output file size = 5230 bytes (1464 bytes = 21.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13763 bytes
Input file size = 13853 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10091
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10091
Output IDAT size = 10091 bytes (3672 bytes decrease)
Output file size = 10169 bytes (3684 bytes = 26.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-8-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14543 bytes
Input file size = 14633 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11774
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11774
Output IDAT size = 11774 bytes (2769 bytes decrease)
Output file size = 11852 bytes (2781 bytes = 19.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13328 bytes
Input file size = 13418 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10254
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10254
Output IDAT size = 10254 bytes (3074 bytes decrease)
Output file size = 10332 bytes (3086 bytes = 23.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32029 bytes
Input file size = 32143 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31685
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30763
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30763
Output IDAT size = 30763 bytes (1266 bytes decrease)
Output file size = 30841 bytes (1302 bytes = 4.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14614 bytes
Input file size = 14704 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11219
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11219
Output IDAT size = 11219 bytes (3395 bytes decrease)
Output file size = 11297 bytes (3407 bytes = 23.17% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13865 bytes
Input file size = 13955 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10945
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10945
Output IDAT size = 10945 bytes (2920 bytes decrease)
Output file size = 11023 bytes (2932 bytes = 21.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24982 bytes
Input file size = 25096 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20620
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20620
Output IDAT size = 20620 bytes (4362 bytes decrease)
Output file size = 20698 bytes (4398 bytes = 17.52% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37747 bytes
Input file size = 37873 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28464
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28464
Output IDAT size = 28464 bytes (9283 bytes decrease)
Output file size = 28542 bytes (9331 bytes = 24.64% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20317 bytes
Input file size = 20419 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15148
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15148
Output IDAT size = 15148 bytes (5169 bytes decrease)
Output file size = 15226 bytes (5193 bytes = 25.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-18-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39876 bytes
Input file size = 40002 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36531
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36531
Output IDAT size = 36531 bytes (3345 bytes decrease)
Output file size = 36609 bytes (3393 bytes = 8.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-22-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28027 bytes
Input file size = 28141 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27158
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26367
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26367
Output IDAT size = 26367 bytes (1660 bytes decrease)
Output file size = 26445 bytes (1696 bytes = 6.03% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-26-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8533 bytes
Input file size = 9403 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7907
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7907
Output IDAT size = 7907 bytes (626 bytes decrease)
Output file size = 7985 bytes (1418 bytes = 15.08% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-28-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34752 bytes
Input file size = 34878 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28748
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28748
Output IDAT size = 28748 bytes (6004 bytes decrease)
Output file size = 28826 bytes (6052 bytes = 17.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-30-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22558 bytes
Input file size = 22660 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17402
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17402
Output IDAT size = 17402 bytes (5156 bytes decrease)
Output file size = 17480 bytes (5180 bytes = 22.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-31-1.png
288x288 pixels, 8 bits/pixel, 235 colors in palette
Input IDAT size = 6977 bytes
Input file size = 7772 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6585
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6585
Output IDAT size = 6585 bytes (392 bytes decrease)
Output file size = 7380 bytes (392 bytes = 5.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-32-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11411 bytes
Input file size = 11501 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10623
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10421
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10421
Output IDAT size = 10421 bytes (990 bytes decrease)
Output file size = 10499 bytes (1002 bytes = 8.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-33-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12421 bytes
Input file size = 12511 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9403
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9403
Output IDAT size = 9403 bytes (3018 bytes decrease)
Output file size = 9481 bytes (3030 bytes = 24.22% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/bellwether_files/figure-html/unnamed-chunk-34-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11927 bytes
Input file size = 12017 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9020
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9020
Output IDAT size = 9020 bytes (2907 bytes decrease)
Output file size = 9098 bytes (2919 bytes = 24.29% decrease)
--- finished re-building ‘bellwether.Rmd’
--- re-building ‘directional.Rmd’ using rmarkdown
Quitting from lines 33-37 [libraries] (directional.Rmd)
Error: processing vignette 'directional.Rmd' failed with diagnostics:
there is no package called 'brms'
--- failed re-building ‘directional.Rmd’
--- re-building ‘longitudinal.Rmd’ using rmarkdown
Quitting from lines 22-27 [unnamed-chunk-1] (longitudinal.Rmd)
Error: processing vignette 'longitudinal.Rmd' failed with diagnostics:
there is no package called 'brms'
--- failed re-building ‘longitudinal.Rmd’
--- re-building ‘roots.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-2-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42948 bytes
Input file size = 43086 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38683
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38683
Output IDAT size = 38683 bytes (4265 bytes decrease)
Output file size = 38761 bytes (4325 bytes = 10.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13027 bytes
Input file size = 13897 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12231
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12206
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12206
Output IDAT size = 12206 bytes (821 bytes decrease)
Output file size = 12284 bytes (1613 bytes = 11.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-5-2.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10646 bytes
Input file size = 11516 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10104
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10093
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10093
Output IDAT size = 10093 bytes (553 bytes decrease)
Output file size = 10171 bytes (1345 bytes = 11.68% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13162 bytes
Input file size = 14032 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12356
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12356
Output IDAT size = 12356 bytes (806 bytes decrease)
Output file size = 12434 bytes (1598 bytes = 11.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-6-2.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11576 bytes
Input file size = 12446 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10834
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10834
Output IDAT size = 10834 bytes (742 bytes decrease)
Output file size = 10912 bytes (1534 bytes = 12.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13478 bytes
Input file size = 14348 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12634
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12634
Output IDAT size = 12634 bytes (844 bytes decrease)
Output file size = 12712 bytes (1636 bytes = 11.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-7-2.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10822 bytes
Input file size = 11692 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10101
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10101
Output IDAT size = 10101 bytes (721 bytes decrease)
Output file size = 10179 bytes (1513 bytes = 12.94% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 12308 bytes
Input file size = 13178 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11562
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11543
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11543
Output IDAT size = 11543 bytes (765 bytes decrease)
Output file size = 11621 bytes (1557 bytes = 11.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-8-2.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9494 bytes
Input file size = 10364 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8757
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8757
Output IDAT size = 8757 bytes (737 bytes decrease)
Output file size = 8835 bytes (1529 bytes = 14.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-11-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26931 bytes
Input file size = 27045 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19075
Output IDAT size = 19075 bytes (7856 bytes decrease)
Output file size = 19153 bytes (7892 bytes = 29.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-18-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30924 bytes
Input file size = 31038 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22359
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22359
Output IDAT size = 22359 bytes (8565 bytes decrease)
Output file size = 22437 bytes (8601 bytes = 27.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-19-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32994 bytes
Input file size = 33120 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28432
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28432
Output IDAT size = 28432 bytes (4562 bytes decrease)
Output file size = 28510 bytes (4610 bytes = 13.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-25-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30554 bytes
Input file size = 30668 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22371
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22371
Output IDAT size = 22371 bytes (8183 bytes decrease)
Output file size = 22449 bytes (8219 bytes = 26.80% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-26-1.png
288x288 pixels, 8 bits/pixel, 235 colors in palette
Input IDAT size = 6977 bytes
Input file size = 7772 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6585
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6585
Output IDAT size = 6585 bytes (392 bytes decrease)
Output file size = 7380 bytes (392 bytes = 5.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-27-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11411 bytes
Input file size = 11501 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10623
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10421
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10421
Output IDAT size = 10421 bytes (990 bytes decrease)
Output file size = 10499 bytes (1002 bytes = 8.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-28-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19796 bytes
Input file size = 19898 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15825
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15825
Output IDAT size = 15825 bytes (3971 bytes decrease)
Output file size = 15903 bytes (3995 bytes = 20.08% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-29-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32994 bytes
Input file size = 33120 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28432
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28432
Output IDAT size = 28432 bytes (4562 bytes decrease)
Output file size = 28510 bytes (4610 bytes = 13.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-31-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20287 bytes
Input file size = 20389 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14656
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14656
Output IDAT size = 14656 bytes (5631 bytes decrease)
Output file size = 14734 bytes (5655 bytes = 27.74% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-32-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31605 bytes
Input file size = 31719 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28350
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28350
Output IDAT size = 28350 bytes (3255 bytes decrease)
Output file size = 28428 bytes (3291 bytes = 10.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pcvr.Rcheck/vign_test/pcvr/vignettes/roots_files/figure-html/unnamed-chunk-32-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12159 bytes
Input file size = 12249 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9127
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9127
Output IDAT size = 9127 bytes (3032 bytes decrease)
Output file size = 9205 bytes (3044 bytes = 24.85% decrease)
--- finished re-building ‘roots.Rmd’
SUMMARY: processing the following files failed:
‘directional.Rmd’ ‘longitudinal.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘cmdstanr’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64