gaawr2: Genetic Association Analysis
This is a companion to Henry-Stewart talk by Zhao (2026, <doi:10.69645/FRFQ9519>),
which gathers information, metadata and scripts to showcase modern genetic analysis – ranging from testing
of polymorphic variant(s) for Hardy-Weinberg equilibrium, association with traits using genetic and statistical
models, Bayesian implementation, power calculation in study design, and genetic annotation. It also covers
R integration with the Linux environment, GitHub, package creation and web applications. The earlier version
by Zhao (2009, <doi:10.69645/DCRY5578>) provides a brief introduction to these topics.
| Version: |
0.0.7 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
dplyr, gap, gap.datasets, ggplot2, survival, Rdpack |
| Suggests: |
BLR, BGLR, biomaRt, bookdown, Cairo, EnsDb.Hsapiens.v75, ensembldb, GMMAT, HardyWeinberg, haplo.stats, httr, httpuv, jsonlite, kableExtra, knitr, MCMCglmm, plumber, powerEQTL, R2jags, regress, Rsamtools, SNPassoc, testthat, tidyr |
| Published: |
2026-03-10 |
| DOI: |
10.32614/CRAN.package.gaawr2 |
| Author: |
Jing Hua Zhao [aut, cre] (ORCID:
<https://orcid.org/0000-0002-1463-5870>, ORCID:
<https://orcid.org/0000-0003-4930-3582>),
Benjamin Altmann [ctb],
Brian Ripley [ctb] |
| Maintainer: |
Jing Hua Zhao <jinghuazhao at hotmail.com> |
| BugReports: |
https://github.com/jinghuazhao/gaawr2/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://jinghuazhao.github.io/gaawr2/,
https://github.com/jinghuazhao/gaawr2 |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
gaawr2 results |
Documentation:
Downloads:
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