| annotate_data |
Annotating the filtered probes |
| annotation_file |
annotation file for the 450k probes |
| CpG_hits |
Identifying genes for which multiple CpG sites show significant methylation difference |
| delta_beta_data |
Applying delta beta analysis to calculate the difference between cases and controls |
| filter_data |
Filtering DNA methylation 450k non_specific probes |
| nonspecific_probes |
450k DNA methylation non specific probes |
| overlap_data |
Overlapping Student's t-test and delta beta results |
| plot_candidate_genes |
Plotting highly different and significant probes annotated by their corresponding gene names |
| plot_data |
Overview description of the DNA methylation pattern for cases and controls |
| plot_gene |
Plotting and exporting methylation profile for candidate genes |
| process.ABC.RAP |
An automated analysis applying all ABC.RAP functions in one script |
| test_data |
test dataset of 450k DNA methylation |
| ttest_data |
applying t-test analysis |
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