Prioritization of Candidate Cancer Subtype Specific Drugs

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Documentation for package ‘SubtypeDrug’ version 0.1.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

AccumulateNormal	SubtypeDrug internal function
CalculateSES	SubtypeDrug internal function
Colork	Color
Disease_drugs	Simulated result data
Drugs_CID	Correspondence table of drug label and drug ID in PubCham database
Geneexp	Simulated gene expression data
GeneexpT	Gene expression data for testing
getDrugMatrix	SubtypeDrug internal function
getDrugSpw	SubtypeDrug internal function
getDrugStructure	Get drug chemical structure diagram data
isPackageLoaded	SubtypeDrug internal function
plotDScoreHeatmap	Plot a heat map of the normalized drug-disease reverse association scores for cancer samples
plotDSpwHeatmap	Plot heat map of the drug regulated subpathway activity score
plotGlobalGraph	Plot a global graph of the drug
plotSpwNetGraph	Polt a subpathway network graph
PrioSubtypeDrug	Prioritization of candidate cancer subtype-specific drugs (PrioSubtypeDrug)
ReadClsFile	SubtypeDrug internal function
SpwNetworkData	Subpathway network structure data
Subtype_drugs	Simulation result data
UserDS	Simulated user-defined drug regulator subpathway dataset
UserDST	User-defined drug regulator subpathway dataset for testing
UserGS	Simulated user-defined gene set data
UserGST	User-defined gene set data for testing