Mendelian Randomization Package
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘MendelianRandomization’ version 0.10.0
Help Pages
-- C --
| calc.rho | Data on effect of calcium on fasting glucose (correlated variants) |
| calcium | Data on effect of calcium on fasting glucose (correlated variants) |
| calciumse | Data on effect of calcium on fasting glucose (correlated variants) |
| chdlodds | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| chdloddsse | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| CLR-class | CLR Class |
| cML_estimate | Estimate with Regular Likelihood |
| cML_estimate_random | Estimate with Regular Likelihood Using Multiple Random Start Points |
| cML_SdTheta | Standard Error of Estimated Theta |
-- D --
| DIVW-class | DIVW Class |
-- E --
| Egger-class | Egger Class |
-- F --
| fastgluc | Data on effect of calcium on fasting glucose (correlated variants) |
| fastglucse | Data on effect of calcium on fasting glucose (correlated variants) |
-- H --
| hdlc | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| hdlcse | Data on lipid effects on coronary artery disease (uncorrelated variants) |
-- I --
| invcov_mvmr | Generate the list of inverse of covariance matrices used in 'MVMR-cML-DP' |
| IVW-class | IVW Class |
-- L --
| ldlc | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| ldlcse | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| lipid_eaf | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| lipid_effect | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| lipid_other | Data on lipid effects on coronary artery disease (uncorrelated variants) |
-- M --
| MaxLik-class | MaxLik Class |
| MRAll-class | MRAll Class |
| MRcML-class | MRcML Class |
| MRConMix-class | MRConMix Class |
| MRHetPen-class | MRHetPen Class |
| MRInput-class | MRInput Class |
| MRLasso-class | MRLasso class |
| MRMBE-class | MRMBE Class |
| MRMVInput-class | MRMVInput Class |
| mr_allmethods | Mendelian randomization estimation using all methods |
| mr_allmethods-method | Mendelian randomization estimation using all methods |
| mr_clr | Conditional likelihood ratio (CLR) method |
| mr_clr-method | Conditional likelihood ratio (CLR) method |
| mr_cML | Constrained maximum likelihood (cML) method |
| mr_cML-method | Constrained maximum likelihood (cML) method |
| mr_conmix | Contamination mixture method |
| mr_conmix-method | Contamination mixture method |
| mr_divw | Debiased inverse-variance weighted method |
| mr_divw-method | Debiased inverse-variance weighted method |
| mr_egger | MR-Egger method |
| mr_egger-method | MR-Egger method |
| mr_forest | Draw a forest plot of causal estimates |
| mr_forest-method | Draw a forest plot of causal estimates |
| mr_funnel | Draw a funnel plot of variant-specific estimates |
| mr_funnel-method | Draw a funnel plot of variant-specific estimates |
| mr_hetpen | Heterogeneity-penalized method |
| mr_hetpen-method | Heterogeneity-penalized method |
| mr_input | Inputting and formatting data for use in causal estimation |
| mr_ivw | Inverse-variance weighted method |
| mr_ivw-method | Inverse-variance weighted method |
| mr_lasso | MR-Lasso method |
| mr_lasso-method | MR-Lasso method |
| mr_loo | Leave-one-out estimates |
| mr_loo-method | Leave-one-out estimates |
| mr_maxlik | Maximum-likelihood method |
| mr_maxlik-method | Maximum-likelihood method |
| mr_mbe | Mode-based method of Hartwig |
| mr_mbe-method | Mode-based method of Hartwig |
| mr_median | Median-based method |
| mr_median-method | Median-based method |
| mr_mvcML | Multivariable constrained maximum likelihood method |
| mr_mvcML-method | Multivariable constrained maximum likelihood method |
| mr_mvegger | Multivariable MR-Egger method |
| mr_mvegger-method | Multivariable MR-Egger method |
| mr_mvgmm | Multivariable generalized method of moments (GMM) method |
| mr_mvgmm-method | Multivariable generalized method of moments (GMM) method |
| mr_mvinput | Inputting and formatting data for use in causal estimation |
| mr_mvivw | Multivariable inverse-variance weighted method |
| mr_mvivw-method | Multivariable inverse-variance weighted method |
| mr_mvivwme | Multivariable inverse-variance weighted method with measurement error |
| mr_mvivwme-method | Multivariable inverse-variance weighted method with measurement error |
| mr_mvlasso | Multivariable MR-Lasso method |
| mr_mvlasso-method | Multivariable MR-Lasso method |
| mr_mvmedian | Multivariable median-based method |
| mr_mvmedian-method | Multivariable median-based method |
| mr_mvpcgmm | Multivariable principal components generalized method of moments (PC-GMM) method |
| mr_mvpcgmm-method | Multivariable principal components generalized method of moments (PC-GMM) method |
| mr_pcgmm | Univariable principal components generalized method of moments (PC-GMM) method |
| mr_pcgmm-method | Univariable principal components generalized method of moments (PC-GMM) method |
| mr_pivw | Penalized inverse-variance weighted method |
| mr_pivw-method | Penalized inverse-variance weighted method |
| mr_plot | Draw a scatter plot of the genetic associations and/or causal estimates |
| mr_plot-method | Draw a scatter plot of the genetic associations and/or causal estimates |
| MVcML_SdTheta | Standard error estimate for MVMR-cML-BIC |
| MVEgger-class | MVEgger Class |
| MVGMM-class | MVGMM Class |
| MVIVW-class | MVIVW Class |
| MVIVWME-class | MVIVWME Class |
| MVLasso-class | MRMVLasso class |
| MVMedian-class | MRMVMedian class |
| MVMRcML-class | MVMRcML Class |
| MVmr_cML | MVMRcML method with Data Perturbation |
| MVmr_cML_DP | MVMRcML method with Data Perturbation |
| MVPCGMM-class | MVPCGMM Class |
-- P --
| PCGMM-class | PCGMM Class |
| phenoscanner | PhenoScanner |
| pheno_input | Extract summarized data from PhenoScanner |
| PIVW-class | PIVW Class |
-- T --
| trig | Data on lipid effects on coronary artery disease (uncorrelated variants) |
| trigse | Data on lipid effects on coronary artery disease (uncorrelated variants) |
-- W --
| WeightedMedian-class | WeightedMedian Class |