Timescale-Specific Variance Ratio for Use in Community Ecology

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Documentation for package ‘tsvr’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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A C E G J P S T V W

-- A --

aggts

Aggregates a 'tsvreq_classic' object across a set of timescales; also the constructor function for class 'vreq_classic_ag'.

-- C --

cospect	Calculate the cospectrum between all pairs of time series
cv2	Calculates various measures of population and community variability
cv2f	Compute a frequency-specific version of CVcom or CVcomip

-- E --

errcheck_data	Error check a data matrix.
errcheck_tsvreq	Error check inputs for the creator function for the 'tsvreq' class.
errcheck_vreq	Error check inputs for the creator function for the 'vreq' class.

-- G --

get_com	Set and get methods for classes in the 'tsvr' package
get_com.default	Set and get methods for classes in the 'tsvr' package
get_com.tsvreq	Basic methods for the 'tsvreq' class
get_com.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
get_com.vreq	Basic methods for the 'vreq' class
get_com.vreq_classic	Basic methods for the 'vreq_classic' class
get_com.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
get_com.vreq_LdM	Basic methods for the 'vreq_LdM' class
get_comnull	Set and get methods for classes in the 'tsvr' package
get_comnull.default	Set and get methods for classes in the 'tsvr' package
get_comnull.tsvreq	Basic methods for the 'tsvreq' class
get_comnull.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
get_comnull.vreq	Basic methods for the 'vreq' class
get_comnull.vreq_classic	Basic methods for the 'vreq_classic' class
get_comnull.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
get_comnull.vreq_LdM	Basic methods for the 'vreq_LdM' class
get_ts	Set and get methods for classes in the 'tsvr' package
get_ts.default	Set and get methods for classes in the 'tsvr' package
get_ts.tsvreq	Basic methods for the 'tsvreq' class
get_ts.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
get_ts.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
get_tsvr	Set and get methods for classes in the 'tsvr' package
get_tsvr.default	Set and get methods for classes in the 'tsvr' package
get_tsvr.tsvreq	Basic methods for the 'tsvreq' class
get_tsvr.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
get_vr	Set and get methods for classes in the 'tsvr' package
get_vr.default	Set and get methods for classes in the 'tsvr' package
get_vr.vreq	Basic methods for the 'vreq' class
get_vr.vreq_classic	Basic methods for the 'vreq_classic' class
get_vr.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
get_vr.vreq_LdM	Basic methods for the 'vreq_LdM' class
get_wts	Set and get methods for classes in the 'tsvr' package
get_wts.default	Set and get methods for classes in the 'tsvr' package
get_wts.tsvreq	Basic methods for the 'tsvreq' class
get_wts.tsvreq_classic	Basic methods for the 'tsvreq_classic' class

-- J --

JRGdat

Percent cover data from Jasper Ridge Biological Preserve serpentine grassland site

-- P --

plot.tsvreq	Basic methods for the 'tsvreq' class
plot.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
print.summary_tsvr	Print method for 'summary_tsvr' class
print.tsvreq	Basic methods for the 'tsvreq' class
print.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
print.vreq	Basic methods for the 'vreq' class
print.vreq_classic	Basic methods for the 'vreq_classic' class
print.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
print.vreq_LdM	Basic methods for the 'vreq_LdM' class

-- S --

setget_methods	Set and get methods for classes in the 'tsvr' package
set_com	Set and get methods for classes in the 'tsvr' package
set_com.default	Set and get methods for classes in the 'tsvr' package
set_com.tsvreq	Basic methods for the 'tsvreq' class
set_com.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
set_com.vreq	Basic methods for the 'vreq' class
set_com.vreq_classic	Basic methods for the 'vreq_classic' class
set_com.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
set_com.vreq_LdM	Basic methods for the 'vreq_LdM' class
set_comnull	Set and get methods for classes in the 'tsvr' package
set_comnull.default	Set and get methods for classes in the 'tsvr' package
set_comnull.tsvreq	Basic methods for the 'tsvreq' class
set_comnull.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
set_comnull.vreq	Basic methods for the 'vreq' class
set_comnull.vreq_classic	Basic methods for the 'vreq_classic' class
set_comnull.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
set_comnull.vreq_LdM	Basic methods for the 'vreq_LdM' class
set_ts	Set and get methods for classes in the 'tsvr' package
set_ts.default	Set and get methods for classes in the 'tsvr' package
set_ts.tsvreq	Basic methods for the 'tsvreq' class
set_ts.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
set_ts.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
set_tsvr	Set and get methods for classes in the 'tsvr' package
set_tsvr.default	Set and get methods for classes in the 'tsvr' package
set_tsvr.tsvreq	Basic methods for the 'tsvreq' class
set_tsvr.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
set_vr	Set and get methods for classes in the 'tsvr' package
set_vr.default	Set and get methods for classes in the 'tsvr' package
set_vr.vreq	Basic methods for the 'vreq' class
set_vr.vreq_classic	Basic methods for the 'vreq_classic' class
set_vr.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
set_vr.vreq_LdM	Basic methods for the 'vreq_LdM' class
set_wts	Set and get methods for classes in the 'tsvr' package
set_wts.default	Set and get methods for classes in the 'tsvr' package
set_wts.tsvreq	Basic methods for the 'tsvreq' class
set_wts.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
summary.tsvreq	Basic methods for the 'tsvreq' class
summary.tsvreq_classic	Basic methods for the 'tsvreq_classic' class
summary.vreq	Basic methods for the 'vreq' class
summary.vreq_classic	Basic methods for the 'vreq_classic' class
summary.vreq_classic_ag	Basic methods for the 'vreq_classic_ag' class
summary.vreq_LdM	Basic methods for the 'vreq_LdM' class

-- T --

tsvreq	Creator function for the 'tsvreq' S3 class
tsvreq_classic	Creator function for the 'tsvreq_classic' S3 class
tsvreq_classic_methods	Basic methods for the 'tsvreq_classic' class
tsvreq_methods	Basic methods for the 'tsvreq' class

-- V --

vr	Compute the classic or Loreau-de Mazancourt variance ratio
vreq	Creator function for the 'vreq' S3 class
vreq_classic	Creator function of 'vreq_classic' S3 class
vreq_classic_ag_methods	Basic methods for the 'vreq_classic_ag' class
vreq_classic_methods	Basic methods for the 'vreq_classic' class
vreq_LdM	Creator function of 'vreq_LdM' S3 class
vreq_LdM_methods	Basic methods for the 'vreq_LdM' class
vreq_methods	Basic methods for the 'vreq' class
vrf	Compute the frequency-specific variance ratio

-- W --

wts	Compute the weights (wts)