Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines


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Documentation for package ‘MM2S’ version 1.0.6

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Frozen_ES_Rank_Matrix MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
genesetHuman MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatGroup3 MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatGroup4 MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatNormal MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatSHH MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatWNT MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GTML_Mouse_Preds Table of Pre-computed MM2S Predictions for 32 replicates of the GTML mouse model
HumanGMT MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
Human_Cho_Expr Gene Expression data from selected samples of the Human CHO Medulloblastoma dataset
MB_SampleInfo MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
MM2S.human MM2S Prediction of Human Medulloblastoma Samples
MM2S.mouse MM2S Prediction of Mouse Medulloblastoma Samples
MM2Ssetup MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
MouseGMT MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
PCARender Principal Component Analysis (PCA) Projections of ssGSEA Rank Matrix for Test Samples Onto the MM2S Training Set
PredictionsBarplot Stacked Barplot of MM2S Subtype Predictions for Given Samples
PredictionsDistributionBoxplot Boxplot of MM2S Subtype Predictions for Given Samples
PredictionsDistributionPie Heatmap of MM2S Subtype Predictions for Given Samples
PredictionsHeatmap Heatmap of MM2S Subtype Predictions for Given Samples
WNT_Mouse_Expr Gene Expression data pertaining to the GMTL mouse mode