A Grammar of Clinical Data Summary


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Documentation for package ‘Tplyr’ version 0.4.4

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Tplyr-package A grammar of summary data for clinical reports
add_column_headers Attach column headers to a Tplyr output
add_layer Attach a layer to a 'tplyr_table' object
add_layers Attach a layer to a 'tplyr_table' object
add_risk_diff Add risk difference to a count layer
add_total_group Combine existing treatment groups for summary
add_total_row Add a Total row into a count summary.
add_treat_grps Combine existing treatment groups for summary
apply_row_masks Replace repeating row label variables with blanks in preparation for display.
build Trigger the execution of the 'tplyr_table'
f_str Create a 'f_str' object
get_by Set or return by layer binding
get_count_layer_formats Get or set the default format strings for descriptive statistics layers
get_desc_layer_formats Get or set the default format strings for descriptive statistics layers
get_numeric_data Retrieve the numeric data from a tplyr objects
get_pop_where Set or return where binding for layer or table
get_precision_by Set or return precision_by layer binding
get_precision_on Set or return precision_on layer binding
get_shift_layer_formats Get or set the default format strings for descriptive statistics layers
get_stats_data Get statistics data
get_target_var Set or return treat_var binding
get_where Set or return where binding for layer or table
get_where.tplyr_layer Set or return where binding for layer or table
get_where.tplyr_table Set or return where binding for layer or table
group_count Create a 'count', 'desc', or 'shift' layer for discrete count based summaries, descriptive statistics summaries, or shift count summaries
group_desc Create a 'count', 'desc', or 'shift' layer for discrete count based summaries, descriptive statistics summaries, or shift count summaries
group_shift Create a 'count', 'desc', or 'shift' layer for discrete count based summaries, descriptive statistics summaries, or shift count summaries
header_n Return or set header_n binding
header_n<- Return or set header_n binding
keep_levels Select levels to keep in a count layer
pop_data Return or set population data bindings
pop_data<- Return or set population data bindings
pop_treat_var Return or set pop_treat_var binding
set_by Set or return by layer binding
set_count_layer_formats Get or set the default format strings for descriptive statistics layers
set_custom_summaries Set custom summaries to be performed within a descriptive statistics layer
set_denoms_by Set variables used in pct denominator calculation
set_denom_ignore Set values the denominator calculation will ignore
set_denom_where Set Logic for denominator subsetting
set_desc_layer_formats Get or set the default format strings for descriptive statistics layers
set_distinct_by Set counts to be distinct by some grouping variable.
set_format_strings Set the format strings and associated summaries to be performed in a layer
set_format_strings.count_layer Set the format strings and associated summaries to be performed in a layer
set_format_strings.desc_layer Set the format strings and associated summaries to be performed in a layer
set_header_n Return or set header_n binding
set_indentation Set the option to prefix the row_labels in the inner count_layer
set_missing_count Set the display for missing strings
set_nest_count Set the option to nest count layers
set_ordering_cols Set the ordering logic for the count layer
set_order_count_method Set the ordering logic for the count layer
set_outer_sort_position Set the value of a outer nested count layer to Inf or -Inf
set_pop_data Return or set population data bindings
set_pop_treat_var Return or set pop_treat_var binding
set_pop_where Set or return where binding for layer or table
set_precision_by Set or return precision_by layer binding
set_precision_on Set or return precision_on layer binding
set_result_order_var Set the ordering logic for the count layer
set_shift_layer_formats Get or set the default format strings for descriptive statistics layers
set_target_var Set or return treat_var binding
set_total_row_label Set the label for the total row
set_treat_var Return or set the treatment variable binding
set_where Set or return where binding for layer or table
set_where.tplyr_layer Set or return where binding for layer or table
set_where.tplyr_table Set or return where binding for layer or table
Tplyr A grammar of summary data for clinical reports
tplyr_layer Create a 'tplyr_layer' object
tplyr_table Create a Tplyr table object
treat_grps Combine existing treatment groups for summary
treat_var Return or set the treatment variable binding