Integrative Analysis of RNA-Seq and ChIP-Seq Data


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Documentation for package ‘intePareto’ version 0.1.2

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bam2counts Compute the number of reads fall into specific genomic region
bam2rpm Compute the normalized number of reads (rpm) fall into specific genomic region
counts2lFC Calculate log2FoldChange
df_final an example of the result of doIntegration
doIntegration Do integrative analysis
doMatch Match the RNA-Seq and ChIP-Seq data on the gene level
doPareto Prioritization of genes based on Z scores
promoter an example of promoter region
res an example of the result of doMatch
test_chip_meta meta data of preprocessed ChIP-Seq data
test_rna_meta meta data of preprocessed RNA-Seq data