Generate Publication Ready Visualizations of Single Cell Transcriptomics Data


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Documentation for package ‘SCpubr’ version 1.0.4

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do_BarPlot Create Bar Plots.
do_BeeSwarmPlot BeeSwarm plot.
do_BoxPlot Generate Box Plots.
do_CellularStatesPlot Cellular States plot.
do_ChordDiagramPlot Generate a Chord diagram.
do_ColorPalette Generate color scales based on a value.
do_CopyNumberVariantPlot Display CNV scores from inferCNV as Feature Plots.
do_CorrelationPlot Create correlation matrix heatmaps.
do_DimPlot Wrapper for DimPlot.
do_DotPlot This function is a wrapper for DotPlot. It provides most of its functionalities while adding extra. You can
do_EnrichmentHeatmap Create enrichment scores heatmaps.
do_FeaturePlot Wrapper for FeaturePlot.
do_GeyserPlot Generate a Geyser plot.
do_GroupwiseDEPlot Compute a heatmap with the results of a group-wise DE analysis.
do_NebulosaPlot Wrapper for Nebulosa::plot_density in Seurat.
do_PathwayActivityPlot Plot Pathway Activities from decoupleR using Progeny prior knowledge.
do_RidgePlot Create ridge plots.
do_TermEnrichmentPlot Display the enriched terms for a given list of genes.
do_TFActivityPlot Plot TF Activities from decoupleR using Dorothea prior knowledge.
do_ViolinPlot Wrapper for VlnPlot.
do_VolcanoPlot Compute a Volcano plot out of DE genes.
human_chr_locations Chromosome arm locations for human genome GRCh38.
state_dependencies State SCpubr current function dependencies.