A C D E F G H I K L M O P R S T U misc
tern-package | tern Package |
add_riskdiff | Split Function to Configure Risk Difference Column |
add_rowcounts | Layout Creating Function to Add Row Total Counts |
aesi_label | Labels for Adverse Event Baskets |
analyze_colvars_functions | Analyze Functions on Columns |
analyze_functions | Analyze Functions |
analyze_num_patients | Number of Patients |
analyze_variables | Analyze Variables |
analyze_vars | Analyze Variables |
analyze_vars_in_cols | Summary numeric variables in columns |
append_varlabels | Add Variable Labels to Top Left Corner in Table |
arrange_grobs | Arrange Multiple Grobs |
as.rtable | Convert to 'rtable' |
as.rtable.data.frame | Convert to 'rtable' |
a_compare | Compare Variables Between Groups |
a_count_occurrences | Occurrence Counts |
a_count_occurrences_by_grade | Occurrence Counts by Grade |
a_count_patients_with_event | Count the Number of Patients with a Particular Event |
a_count_patients_with_flags | Count the Number of Patients with Particular Flags |
a_count_values | Counting Specific Values |
a_coxreg | Cox Proportional Hazards Regression |
a_length_proportion | Estimation of Proportions per Level of Factor |
a_odds_ratio | Odds Ratio Estimation |
a_proportion | Estimation of Proportions |
a_proportion_diff | Proportion Difference |
a_summary | Analyze Variables |
CombinationFunction | Combination Functions Class |
CombinationFunction-class | Combination Functions Class |
combination_function | Combination Functions Class |
combine_counts | Combine Counts |
combine_groups | Reference and Treatment Group Combination |
combine_levels | Combine Factor Levels |
combine_vectors | Combine Two Vectors Element Wise |
compare_variables | Compare Variables Between Groups |
compare_vars | Compare Variables Between Groups |
control_analyze_vars | Control Function for Descriptive Statistics |
control_coxph | Control Function for 'CoxPH' Model |
control_coxreg | Controls for Cox Regression |
control_incidence_rate | Control function for incidence rate |
control_lineplot_vars | Control Function for 'g_lineplot' Function |
control_logistic | Control Function for Logistic Regression Model Fitting |
control_step | Control Function for Subgroup Treatment Effect Pattern (STEP) Calculations |
control_summarize_vars | Control Function for Descriptive Statistics |
control_surv_time | Control Function for 'survfit' Model for Survival Time |
control_surv_timepoint | Control Function for 'survfit' Model for Patient's Survival Rate at time point |
count_occurrences | Occurrence Counts |
count_occurrences_by_grade | Occurrence Counts by Grade |
count_patients_with_event | Count the Number of Patients with a Particular Event |
count_patients_with_flags | Count the Number of Patients with Particular Flags |
count_values | Counting Specific Values |
count_values_funs | Counting Specific Values |
cox_regression | Cox Proportional Hazards Regression |
cox_regression_inter | Cox Regression Helper: Interactions |
create_afun_compare | Constructor Function for 'compare_vars()' |
create_afun_summary | Constructor Function for 'analyze_vars()' and 'summarize_colvars()' |
cut_quantile_bins | Cutting Numeric Vector into Empirical Quantile Bins |
day2month | Conversion of Days to Months |
decorate_grob | Add Titles, Footnotes, Page Number, and a Bounding Box to a Grid Grob |
decorate_grob_set | Decorate Set of 'grobs' and Add Page Numbering |
default_na_str | Default string replacement for 'NA' values |
default_stats_formats_labels | Get default statistical methods and their associated formats, labels, and indent modifiers |
df_explicit_na | Encode Categorical Missing Values in a Data Frame |
draw_grob | Draw 'grob' |
d_count_abnormal_by_baseline | Description Function for 's_count_abnormal_by_baseline()' |
d_count_cumulative | Description of Cumulative Count |
d_count_missed_doses | Description Function that Calculates Labels for 's_count_missed_doses()'. |
d_onco_rsp_label | Description of Standard Oncology Response |
d_pkparam | Generate PK reference dataset |
d_proportion | Description of the Proportion Summary |
d_proportion_diff | Description of Method Used for Proportion Comparison |
d_rsp_subgroups_colvars | Labels for Column Variables in Binary Response by Subgroup Table |
d_survival_subgroups_colvars | Labels for Column Variables in Survival Duration by Subgroup Table |
d_test_proportion_diff | Description of the Difference Test Between Two Proportions |
estimate_multinomial_response | Estimation of Proportions per Level of Factor |
estimate_multinomial_rsp | Estimation of Proportions per Level of Factor |
estimate_odds_ratio | Odds Ratio Estimation |
estimate_proportion | Estimation of Proportions |
estimate_proportions | Estimation of Proportions |
estimate_proportion_diff | Proportion Difference |
explicit_na | Missing Data |
extract_rsp_biomarkers | Prepares Response Data Estimates for Multiple Biomarkers in a Single Data Frame |
extract_rsp_subgroups | Prepares Response Data for Population Subgroups in Data Frames |
extract_survival_biomarkers | Prepares Survival Data Estimates for Multiple Biomarkers in a Single Data Frame |
extract_survival_subgroups | Prepares Survival Data for Population Subgroups in Data Frames |
extreme_format | Formatting Extreme Values |
ex_data | Simulated 'CDISC' Data for Examples |
fct_collapse_only | Collapsing of Factor Levels and Keeping Only Those New Group Levels |
fct_discard | Discard Certain Levels from a Factor |
fct_explicit_na_if | Insertion of Explicit Missings in a Factor |
fit_coxreg | Fits for Cox Proportional Hazards Regression |
fit_coxreg_multivar | Fits for Cox Proportional Hazards Regression |
fit_coxreg_univar | Fits for Cox Proportional Hazards Regression |
fit_logistic | Fit for Logistic Regression |
fit_rsp_step | Subgroup Treatment Effect Pattern (STEP) Fit for Binary (Response) Outcome |
fit_survival_step | Subgroup Treatment Effect Pattern (STEP) Fit for Survival Outcome |
forest_viewport | Create a Viewport Tree for the Forest Plot |
formatting_functions | Formatting Functions |
format_auto | Automatic formats from data significant digits |
format_count_fraction | Formatting Count and Fraction |
format_count_fraction_fixed_dp | Formatting Count and Percentage with Fixed Single Decimal Place |
format_count_fraction_lt10 | Formatting Count and Fraction with Special Case for Count < 10 |
format_extreme_values | Formatting a Single Extreme Value |
format_extreme_values_ci | Formatting Extreme Values Part of a Confidence Interval |
format_fraction | Formatting Fraction and Percentage |
format_fraction_fixed_dp | Formatting Fraction and Percentage with Fixed Single Decimal Place |
format_fraction_threshold | Formatting Fraction with Lower Threshold |
format_sigfig | Formatting Numeric Values By Significant Figures |
format_xx | Formatting: XX as Formatting Function |
f_conf_level | Utility function to create label for confidence interval |
f_pval | Utility function to create label for p-value |
get_formats_from_stats | Get default statistical methods and their associated formats, labels, and indent modifiers |
get_indents_from_stats | Get default statistical methods and their associated formats, labels, and indent modifiers |
get_labels_from_stats | Get default statistical methods and their associated formats, labels, and indent modifiers |
get_smooths | Smooth Function with Optional Grouping |
get_stats | Get default statistical methods and their associated formats, labels, and indent modifiers |
groups_list_to_df | Convert List of Groups to Data Frame |
g_forest | Create a Forest Plot based on a Table |
g_ipp | Individual Patient Plots |
g_km | Kaplan-Meier Plot |
g_lineplot | Line plot with the optional table |
g_step | Create a STEP Graph |
g_waterfall | Horizontal Waterfall Plot |
has_counts_difference | Occurrence Table Pruning |
has_count_in_any_col | Occurrence Table Pruning |
has_count_in_cols | Occurrence Table Pruning |
has_fractions_difference | Occurrence Table Pruning |
has_fraction_in_any_col | Occurrence Table Pruning |
has_fraction_in_cols | Occurrence Table Pruning |
h_adlb_abnormal_by_worst_grade | Helper function to prepare 'ADLB' for 'count_abnormal_by_worst_grade()' |
h_adlb_worsen | Helper Function to Prepare 'ADLB' with Worst Labs |
h_adsl_adlb_merge_using_worst_flag | Helper Function for Deriving Analysis Datasets for 'LBT13' and 'LBT14' |
h_ancova | Helper Function to Return Results of a Linear Model |
h_append_grade_groups | Helper function for 's_count_occurrences_by_grade()' |
h_col_indices | Obtain Column Indices |
h_count_cumulative | Helper Function for 's_count_cumulative()' |
h_coxph_df | Helper Functions for Tabulating Survival Duration by Subgroup |
h_coxph_subgroups_df | Helper Functions for Tabulating Survival Duration by Subgroup |
h_coxreg_extract_interaction | Cox Regression Helper: Interactions |
h_coxreg_inter_effect | Cox Regression Helper: Interactions |
h_coxreg_inter_effect.character | Cox Regression Helper: Interactions |
h_coxreg_inter_effect.factor | Cox Regression Helper: Interactions |
h_coxreg_inter_effect.numeric | Cox Regression Helper: Interactions |
h_coxreg_inter_estimations | Cox Regression Helper: Interactions |
h_coxreg_multivar_extract | Helper Functions for Cox Proportional Hazards Regression |
h_coxreg_multivar_formula | Helper Functions for Cox Proportional Hazards Regression |
h_coxreg_mult_cont_df | Helper Functions for Tabulating Biomarker Effects on Survival by Subgroup |
h_coxreg_univar_extract | Helper Functions for Cox Proportional Hazards Regression |
h_coxreg_univar_formulas | Helper Functions for Cox Proportional Hazards Regression |
h_cox_regression | Helper Functions for Cox Proportional Hazards Regression |
h_data_plot | Helper function: tidy survival fit |
h_decompose_gg | 'ggplot' Decomposition |
h_format_row | Helper function to get the right formatting in the optional table in 'g_lineplot'. |
h_format_threshold | Formatting Extreme Values |
h_get_format_threshold | Formatting Extreme Values |
h_get_interaction_vars | Helper Functions for Multivariate Logistic Regression |
h_ggkm | Helper function: KM plot |
h_glm_interaction_extract | Helper Functions for Multivariate Logistic Regression |
h_glm_inter_term_extract | Helper Functions for Multivariate Logistic Regression |
h_glm_simple_term_extract | Helper Functions for Multivariate Logistic Regression |
h_grob_coxph | Helper Function: 'CoxPH' Grob |
h_grob_median_surv | Helper Function: Survival Estimation Grob |
h_grob_tbl_at_risk | Helper: Patient-at-Risk Grobs |
h_grob_y_annot | Helper: Grid Object with y-axis Annotation |
h_g_ipp | Helper Function To Create Simple Line Plot over Time |
h_interaction_coef_name | Helper Functions for Multivariate Logistic Regression |
h_interaction_term_labels | Helper Functions for Multivariate Logistic Regression |
h_km_layout | Helper: KM Layout |
h_logistic_inter_terms | Helper Functions for Multivariate Logistic Regression |
h_logistic_mult_cont_df | Helper Functions for Tabulating Biomarker Effects on Binary Response by Subgroup |
h_logistic_regression | Helper Functions for Multivariate Logistic Regression |
h_logistic_simple_terms | Helper Functions for Multivariate Logistic Regression |
h_map_for_count_abnormal | Helper Function to create a map dataframe that can be used in 'trim_levels_to_map' split function. |
h_odds_ratio | Helper Functions for Odds Ratio Estimation |
h_odds_ratio_df | Helper Functions for Tabulating Binary Response by Subgroup |
h_odds_ratio_subgroups_df | Helper Functions for Tabulating Binary Response by Subgroup |
h_or_cat_interaction | Helper Functions for Multivariate Logistic Regression |
h_or_cont_interaction | Helper Functions for Multivariate Logistic Regression |
h_or_interaction | Helper Functions for Multivariate Logistic Regression |
h_pkparam_sort | Sort Data by PK PARAM Variable |
h_proportions | Helper Functions for Calculating Proportion Confidence Intervals |
h_proportion_df | Helper Functions for Tabulating Binary Response by Subgroup |
h_proportion_subgroups_df | Helper Functions for Tabulating Binary Response by Subgroup |
h_prop_diff | Helper Functions to Calculate Proportion Difference |
h_response_biomarkers_subgroups | Helper Functions for Tabulating Biomarker Effects on Binary Response by Subgroup |
h_response_subgroups | Helper Functions for Tabulating Binary Response by Subgroup |
h_rsp_to_logistic_variables | Helper Functions for Tabulating Biomarker Effects on Binary Response by Subgroup |
h_simple_term_labels | Helper Functions for Multivariate Logistic Regression |
h_split_by_subgroups | Split Dataframe by Subgroups |
h_split_param | Split parameters |
h_stack_by_baskets | Helper Function to create a new 'SMQ' variable in 'ADAE' by stacking 'SMQ' and/or 'CQ' records. |
h_step | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_step_rsp_est | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_step_rsp_formula | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_step_survival_est | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_step_survival_formula | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_step_trt_effect | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_step_window | Helper Functions for Subgroup Treatment Effect Pattern (STEP) Calculations |
h_survival_biomarkers_subgroups | Helper Functions for Tabulating Biomarker Effects on Survival by Subgroup |
h_survival_duration_subgroups | Helper Functions for Tabulating Survival Duration by Subgroup |
h_survtime_df | Helper Functions for Tabulating Survival Duration by Subgroup |
h_survtime_subgroups_df | Helper Functions for Tabulating Survival Duration by Subgroup |
h_surv_to_coxreg_variables | Helper Functions for Tabulating Biomarker Effects on Survival by Subgroup |
h_tab_one_biomarker | Helper Function for Tabulation of a Single Biomarker Result |
h_tab_rsp_one_biomarker | Helper Functions for Tabulating Biomarker Effects on Binary Response by Subgroup |
h_tab_surv_one_biomarker | Helper Functions for Tabulating Biomarker Effects on Survival by Subgroup |
h_tbl_coxph_pairwise | Helper Function: Pairwise 'CoxPH' table |
h_tbl_median_surv | Helper Function: Survival Estimations |
h_worsen_counter | Helper Function to Analyze Patients for 's_count_abnormal_lab_worsen_by_baseline()' |
h_xticks | Helper function: x tick positions |
imputation_rule | Apply 1/3 or 1/2 Imputation Rule to Data |
individual_patient_plot | Individual Patient Plots |
keep_content_rows | Occurrence Table Pruning |
keep_rows | Occurrence Table Pruning |
labels_use_control | Update Labels According to Control Specifications |
level_order | Custom Split Functions |
logistic_regression_cols | Logistic Regression Multivariate Column Layout Function |
logistic_summary_by_flag | Logistic Regression Summary Table Constructor Function |
month2day | Conversion of Months to Days |
odds_ratio | Odds Ratio Estimation |
or_clogit | Helper Functions for Odds Ratio Estimation |
or_glm | Helper Functions for Odds Ratio Estimation |
prop_agresti_coull | Helper Functions for Calculating Proportion Confidence Intervals |
prop_clopper_pearson | Helper Functions for Calculating Proportion Confidence Intervals |
prop_diff | Proportion Difference |
prop_diff_cmh | Helper Functions to Calculate Proportion Difference |
prop_diff_ha | Helper Functions to Calculate Proportion Difference |
prop_diff_nc | Helper Functions to Calculate Proportion Difference |
prop_diff_strat_nc | Helper Functions to Calculate Proportion Difference |
prop_diff_wald | Helper Functions to Calculate Proportion Difference |
prop_jeffreys | Helper Functions for Calculating Proportion Confidence Intervals |
prop_strat_wilson | Helper Functions for Calculating Proportion Confidence Intervals |
prop_wald | Helper Functions for Calculating Proportion Confidence Intervals |
prop_wilson | Helper Functions for Calculating Proportion Confidence Intervals |
prune_occurrences | Occurrence Table Pruning |
reapply_varlabels | Reapply Variable Labels |
ref_group_position | Custom Split Functions |
response_biomarkers_subgroups | Tabulate Biomarker Effects on Binary Response by Subgroup |
rtable2gg | Convert 'rtable' object to 'ggplot' object |
sas_na | Convert Strings to 'NA' |
score_occurrences | Occurrence Table Sorting |
score_occurrences_cols | Occurrence Table Sorting |
score_occurrences_cont_cols | Occurrence Table Sorting |
score_occurrences_subtable | Occurrence Table Sorting |
set_default_na_str | Default string replacement for 'NA' values |
split_cols_by_groups | Split Columns by Groups of Levels |
stack_grobs | Stack Multiple Grobs |
stat_mean_ci | Confidence Interval for Mean |
stat_mean_pval | p-Value of the Mean |
stat_median_ci | Confidence Interval for Median |
stat_propdiff_ci | Proportion Difference and Confidence Interval |
strata_normal_quantile | Helper Function for the Estimation of Stratified Quantiles |
summarize_colvars | Summarize Variables in Columns |
summarize_coxreg | Cox Proportional Hazards Regression |
summarize_functions | Summarize Functions |
summarize_logistic | Multivariate Logistic Regression Table |
summarize_num_patients | Number of Patients |
summarize_occurrences | Occurrence Counts |
summarize_occurrences_by_grade | Occurrence Counts by Grade |
summarize_vars | Analyze Variables |
summary_custom | Get default statistical methods and their associated formats, labels, and indent modifiers |
summary_formats | Get default statistical methods and their associated formats, labels, and indent modifiers |
summary_labels | Get default statistical methods and their associated formats, labels, and indent modifiers |
survival_biomarkers_subgroups | Tabulate Biomarker Effects on Survival by Subgroup |
s_compare | Compare Variables Between Groups |
s_compare.character | Compare Variables Between Groups |
s_compare.factor | Compare Variables Between Groups |
s_compare.logical | Compare Variables Between Groups |
s_compare.numeric | Compare Variables Between Groups |
s_count_occurrences | Occurrence Counts |
s_count_occurrences_by_grade | Occurrence Counts by Grade |
s_count_patients_with_event | Count the Number of Patients with a Particular Event |
s_count_patients_with_flags | Count the Number of Patients with Particular Flags |
s_count_values | Counting Specific Values |
s_count_values.character | Counting Specific Values |
s_count_values.factor | Counting Specific Values |
s_count_values.logical | Counting Specific Values |
s_coxreg | Cox Proportional Hazards Regression |
s_length_proportion | Estimation of Proportions per Level of Factor |
s_num_patients | Number of Patients |
s_num_patients_content | Number of Patients |
s_odds_ratio | Odds Ratio Estimation |
s_proportion | Estimation of Proportions |
s_proportion_diff | Proportion Difference |
s_summary | Analyze Variables |
s_summary.character | Analyze Variables |
s_summary.factor | Analyze Variables |
s_summary.logical | Analyze Variables |
s_summary.numeric | Analyze Variables |
tabulate_rsp_biomarkers | Tabulate Biomarker Effects on Binary Response by Subgroup |
tabulate_survival_biomarkers | Tabulate Biomarker Effects on Survival by Subgroup |
tern | tern Package |
tern_default_formats | Get default statistical methods and their associated formats, labels, and indent modifiers |
tern_default_labels | Get default statistical methods and their associated formats, labels, and indent modifiers |
tern_default_stats | Get default statistical methods and their associated formats, labels, and indent modifiers |
tern_ex_adae | Simulated 'CDISC' Data for Examples |
tern_ex_adlb | Simulated 'CDISC' Data for Examples |
tern_ex_adpp | Simulated 'CDISC' Data for Examples |
tern_ex_adrs | Simulated 'CDISC' Data for Examples |
tern_ex_adsl | Simulated 'CDISC' Data for Examples |
tern_ex_adtte | Simulated 'CDISC' Data for Examples |
tidy.coxreg.multivar | Custom Tidy Methods for Cox Regression |
tidy.coxreg.univar | Custom Tidy Methods for Cox Regression |
tidy.glm | Custom Tidy Method for Binomial GLM Results |
tidy.step | Custom Tidy Method for STEP Results |
tidy.summary.coxph | Custom Tidy Methods for Cox Regression |
tidy_coxreg | Custom Tidy Methods for Cox Regression |
to_n | Replicate Entries of a Vector if Required |
to_string_matrix | Convert Table into Matrix of Strings |
univariate | Univariate Formula Special Term |
update_weights_strat_wilson | Helper Function for the Estimation of Weights for 'prop_strat_wilson' |
utils_split_funs | Custom Split Functions |
!-method | Combination Functions Class |
&-method | Combination Functions Class |
|-method | Combination Functions Class |