Fast Spatial Species Accumulation Curves

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Documentation for package ‘spacc’ version 0.11.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ace	ACE Richness Estimator
alphaDiversity	Alpha Diversity (Per-Site)
analytical	Analytical Accumulation Methods
arc	Accumulation Rate Curve (ARC) Richness Estimator
as_sf	Convert spacc_metrics to sf
as_spacc	Convert an Accumulation Curve from Another Package to a spacc Object
as_spacc.data.frame	Convert an Accumulation Curve from Another Package to a spacc Object
as_spacc.default	Convert an Accumulation Curve from Another Package to a spacc Object
as_spacc.numeric	Convert an Accumulation Curve from Another Package to a spacc Object
as_spacc.specaccum	Convert an Accumulation Curve from Another Package to a spacc Object
autoplot.spacc	Autoplot Methods for spacc Objects
betaDecay	Beta Distance-Decay
bootstrap_richness	Bootstrap Richness Estimator
c.spacc	Combine spacc Objects
c.spacc_beta	Combine spacc_beta Objects
c.spacc_coverage	Combine spacc_coverage Objects
c.spacc_hill	Combine spacc_hill Objects
chao1	Chao1 Richness Estimator
chao2	Chao2 Richness Estimator
coleman	Coleman Expected Accumulation
collector	Collector's Curve
compare	Compare Two Accumulation Curves
compareModels	Compare Multiple SAR Models
completenessProfile	Sample Completeness Profile
confint.spacc_fit	Confidence interval for an extrapolated asymptote
dar	Diversity-Area Relationship (DAR)
dar.default	Diversity-Area Relationship (DAR)
dar.spacc	Diversity-Area Relationship (DAR)
dar.spacc_func	Diversity-Area Relationship (DAR)
dar.spacc_hill	Diversity-Area Relationship (DAR)
dar.spacc_phylo	Diversity-Area Relationship (DAR)
dar.spacc_redundancy	Diversity-Area Relationship (DAR)
distanceDecay	Distance-Decay Analysis
distances	Compute Distance Matrix
diversityPartition	Alpha-Beta-Gamma Diversity Partitioning
diversityProfile	Diversity Profile
evenness	Evenness Profiles
extrapolate	Extrapolate Total Species Richness
extrapolateArea	Extrapolate Richness to a Larger Area (Ugland T-S Curve)
extrapolateCoverage	Extrapolate Diversity Beyond Observed Coverage
gammaDiversity	Gamma Diversity (Regional)
iChao1	Improved Chao1 (iChao1) Richness Estimator
iChao2	Improved Chao2 (iChao2) Richness Estimator
interpolateCoverage	Interpolate Richness at Target Coverage Levels
jackknife	Jackknife Richness Estimator
mao_tau	Exact (Mao Tau) Expected Accumulation
plot.spacc	Plot Spatial SAC
plot.spacc_metrics	Plot spacc_metrics
predict.spacc	Predict from Empirical Accumulation Curve
predict.spacc_area	Predict richness at a given area
predict.spacc_fit	Predict richness at a given sampling effort
rarefy	Individual-Based Rarefaction
ses	Standardized Effect Size (SES) via Null Models
sesars	Sampling Effort Species-Area Relationship (SESARS)
sfar	Species-Fragmented Area Relationship (SFAR)
spacc	Spatial Species Accumulation Curves
spaccBeta	Spatial Beta Diversity Accumulation
spaccCoverage	Coverage-Based Spatial Rarefaction
spaccDiversity	Spatial Accumulation of a Custom Diversity Metric
spaccEndemism	Spatial Endemism Accumulation
spaccFunc	Spatial Functional Diversity Accumulation
spaccHill	Spatial Accumulation with Hill Numbers
spaccHillBeta	Spatial Hill Number Beta Diversity
spaccHillCoverage	Spatial Hill Numbers at Standardized Coverage
spaccMetrics	Per-Site Accumulation Metrics
spaccNetwork	Spatial Accumulation of Interaction Diversity
spaccPhylo	Spatial Phylogenetic Diversity Accumulation
spaccRedundancy	Spatial Phylogenetic or Functional Redundancy Accumulation
spaccWavefront	Wavefront Expansion Accumulation
spatialEigenvectors	Spatial Eigenvectors (PCNM/dbMEM)
spatialPartition	Spatial Variance Partitioning with MEMs
spatialRarefaction	Spatially-Constrained Rarefaction
subsample	Spatial Subsampling
zetaDiversity	Zeta Diversity