Spatial Null Models and Transforms for Brain Map Comparison

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Documentation for package ‘neuromapr’ version 0.2.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

annot_to_gifti	Convert FreeSurfer annotation to GIFTI
as.matrix.null_distribution	Create a null distribution object
check_wb_command	Check for Connectome Workbench
clear_neuromaps_cache	Clear cached neuromaps registry data
compare_maps	Compare brain maps with spatial null model significance testing
fetch_neuromaps_annotation	Download a neuromaps annotation
fsmorph_to_gifti	Convert FreeSurfer morphometry to GIFTI
generate_nulls	Generate null distributions for brain map data
get_parcel_centroids	Compute parcel centroids
get_surface_distance	Compute geodesic distances on a surface mesh
make_surf_graph	Build an igraph from a triangular surface mesh
neuromaps_available	List available neuromaps annotations
new_null_distribution	Create a null distribution object
null_alexander_bloch	Alexander-Bloch spin test null model
null_baum	Baum spin test null model
null_burt2018	Burt 2018 spatial autoregressive null model
null_burt2020	Variogram-matching null model
null_cornblath	Cornblath spin test null model
null_distribution	Create a null distribution object
null_moran	Moran spectral randomization null model
null_spin_hungarian	Spin-test null models for brain maps
null_spin_vasa	Spin-test null models for brain maps
parcellate	Parcellate brain map data
parcels_to_vertices	Map parcel data back to vertices
permtest_metric	Permutation test for any metric between brain maps
plot.null_distribution	Create a null distribution object
print.neuromaps_enhanced_comparison	Compare brain maps with spatial null model significance testing
print.null_distribution	Create a null distribution object
read_brain_map_values	Read vertex/voxel values from a brain map file
resample_images	Resample brain maps for comparison
summary.null_distribution	Create a null distribution object
transform_to_space	Transform brain maps between coordinate spaces
unparcellate	Unparcellate brain map data
vertex_areas	Compute per-vertex surface areas
vertices_to_parcels	Aggregate vertex data into parcels