b37f7417bf3aba8a56f4354379898b60 *DESCRIPTION
a661c16e791afa15a89529c91e10e643 *LICENSE.note
191a4d829f08f29a4ef5dcfcfcaccf34 *NAMESPACE
f345adcecdc5477ef23a3bdc9af34777 *NEWS.md
7864818c13aba4f1f56fc2acdbe16375 *R/RcppExports.R
8e045b50abfb693728abed76fb6cd081 *R/generate_strollur_objects.R
786c95171cd823e067b50b44e5f9691d *R/rchime-package.R
d065a7273a617d15ad10597301d2ece2 *R/rchime.R
f2b924534e4054e65525b678045e2c6a *R/rchime_example.R
19f23fd1f28a7831e8fb39a4bf414c32 *R/rchime_options.R
484d0597f4537408a1967a713d5969f0 *R/silva_gold.R
a90ae9774007c3ea11457035024d4dc6 *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
bb2f5028ab9ddea3af78fdd26a89ba58 *build/vignette.rds
8cd8c04bb953175b697d9e2ce2a349e3 *inst/CITATION
d1997a75cb56969cb7379e0c530023ff *inst/doc/chimera_report.R
ef9fac095b8a8dc0d744e233ae9651b5 *inst/doc/chimera_report.Rmd
bf55ba1e9db9fff1b28527f94a1cf4ac *inst/doc/chimera_report.html
5fa0dfcb4ee48190908ac3e2ed96507f *inst/doc/denovo_based_detection.R
31996209906bc8e5dff1a190abffb079 *inst/doc/denovo_based_detection.Rmd
8ee0d5de640d982bc71901a442fd2d54 *inst/doc/denovo_based_detection.html
6d00402073d1d8ab818901305f4d8b8d *inst/doc/rchime.R
7403c6ff154d38340d88af56c6783652 *inst/doc/rchime.Rmd
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d7eeb230b9df8054b77b37f11f22e4c8 *inst/extdata/miseq_abundance.rds
9738a8c225e6d323a1311a8adf1669d0 *inst/extdata/miseq_abundance_by_sample.rds
fb3c9324fef096f867e448a76f9ba334 *inst/extdata/miseq_data_frame.rds
b15269e542973164bcc9ffb53d689904 *inst/extdata/miseq_data_frame_by_sample.rds
5b6abf8e825694fc60b2458d6f666988 *inst/extdata/miseq_data_frame_by_sample_small.rds
dfce35fa0e2a2318134b4e205566276d *inst/extdata/miseq_fasta.rds
e76ec435ea67e53d23282e4cd09f0e58 *inst/extdata/miseq_names_by_sample.rds
e45ff3c1ec0f38158b8b38e11406ca85 *inst/extdata/miseq_sequences_by_sample.rds
6b9413a05506b0a2cacfd1ddaaa96e77 *inst/extdata/silva.gold.rds
58a391d84d4dc02270d77402f7a87dd0 *inst/extdata/single_sample_abundance.rds
2c59566f791c848b663ec412ae1d03aa *inst/extdata/strollur_miseq_tiny.rds
dbc2e65a47c6fb733efdedeec58f5d2f *inst/extdata/strollur_multi_sample_small.rds
b51e4884b9572c2eeecea0d7dfdb153f *inst/extdata/strollur_multi_sample_tiny.rds
dbbae0330875ed342f86807b057853c3 *inst/extdata/strollur_reference.rds
9d83072bda7ce53ccd6552531d78bea1 *inst/extdata/strollur_single_sample.rds
46eff8e1e492199a3e563c8e625d4ac1 *inst/extdata/strollur_single_sample_tiny.rds
f3fa245c64716e67f6888746a77d7ec8 *inst/include/rchime.h
35dae3b408992f61aabe6c5012956bcf *man/figures/logo.png
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7936da0699f2fd876b73e04d2d58d232 *man/rchime-package.Rd
d194412815f766eef7e2c8a43f8c5d52 *man/rchime.Rd
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8c79e1c206c52c0e9a938cce892a019d *man/rchime_options.Rd
34c21043d9d72ae7936d2bbab1bafdd0 *man/silva_gold.Rd
adfbfe05a08d937a3fcfb48b85727d8f *src/RcppExports.cpp
989ba173f22f40bf4b114974a059b64e *src/align_simd.cc
19d7f02fad89d401a210c20bc9978109 *src/align_simd.h
3661486571a2ab06d1bc773717bbef59 *src/bitmap.cc
65aa89e252ea24c9eb7f07ea660e88a0 *src/bitmap.h
38d4766d3b915168ef2c1cd9d2e298c4 *src/chime.h
b6cc07e7b997445a18eef8b16bdaea5d *src/chimera_vsearch.cpp
115bc13a61c16f9e781930f6d70fa44f *src/chimera_vsearch.h
11e3f72df0ec1bf968eda2b7a7453c27 *src/cigar.cpp
2113a2bef3471ccf723c38060b49dbb4 *src/cigar.h
b403f1400f89439c1ca0e1f6b36001cd *src/cpu.cc
c45bab9caed0ab5f11088fecfd1b75f1 *src/cpu.h
683016a03b17266812b5e20e5ea6cfcf *src/db.cc
569cfa9c9aa38bc915fe91737f9e24f4 *src/db.h
c57ab6033bb86d751be144578a4f1d2d *src/dbindex.cc
b740816fdfccb0c7d893108c803b0e19 *src/dbindex.h
923e33b524d215627c3e7cb05bff51f3 *src/linmemalign.cc
23e2f1705bf129f3c8f07cf837df165b *src/linmemalign.h
63b102ff1921613d04072520b0fc9ceb *src/maps.cpp
99c36e27d439cb3272adf4c6628be1e2 *src/maps.h
ca167df7908081ff9b4bc83675ee0451 *src/minheap.cc
ab0bcf0c8af1790cff830f5a10226893 *src/minheap.h
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79f3804688d76511e2f0ba5c20001857 *src/rcpp_rchime.cpp
951d6f20d25ab604ae2f99eeaeb5605d *src/searchcore.cc
a29954e1c713c795407c6001d5603e43 *src/searchcore.h
83c21b4cfbd975a4e380ab3979cb3a3a *src/seqcmp.cpp
c76f55fe327af712dae857607bd0060f *src/seqcmp.h
1171b667e17c95e9592294e220820a9a *src/span.h
96aee3508113c96fb74e5d38447f965a *src/unique.cc
24d27ec87cff71043ca6ebb6ee4f7eaa *src/unique.h
f81937442755cc224170beafde171e09 *src/util.cc
46b14f545d21298fd38543bda769b825 *src/util.h
19decec15b534d5f9b05da2a76b3529c *src/vsearch.h
e44466297cbaed3b7372f78df5fde683 *src/vsearch_main.cc
03f5fd9551c403f05be54ca301c38f9a *src/vsearch_main.h
84e5ab48bcc2ee4c372218d76280cfa2 *tests/testthat.R
698b8d48df1e321ebe9c5c30e72fbe85 *tests/testthat/helper.R
d6dd651d00c4f2c2837662b387f79b66 *tests/testthat/test-rchime_dataframe.R
a44e595c00d5a5043b9f0d2df33b632a *tests/testthat/test-rchime_options.R
84e113bbd9c00f5b9ec728ad24f4da62 *tests/testthat/test-rchime_strollur.R
6b23f4a3371fd70d0861a3b0e78cb886 *tests/testthat/test-rcpp_rchime.R
ef9fac095b8a8dc0d744e233ae9651b5 *vignettes/chimera_report.Rmd
31996209906bc8e5dff1a190abffb079 *vignettes/denovo_based_detection.Rmd
7403c6ff154d38340d88af56c6783652 *vignettes/rchime.Rmd
863a789d6d47c41b12844db91ba7c839 *vignettes/reference_based_detection.Rmd
