Last updated on 2026-01-02 01:50:08 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 29.46 | 328.61 | 358.07 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 16.98 | 212.92 | 229.90 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 59.00 | 456.52 | 515.52 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 28.00 | 266.53 | 294.53 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 34.00 | 388.00 | 422.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.4 | 27.44 | 259.53 | 286.97 | ERROR | |
| r-release-linux-x86_64 | 0.2.4 | 23.39 | 259.41 | 282.80 | ERROR | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 17.00 | 423.00 | 440.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 34.00 | 389.00 | 423.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 20.00 | 377.00 | 397.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 43.00 | 541.00 | 584.00 | ERROR |
Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [127s/132s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-29 17:39:13.613087 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-29 17:39:18.552998 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-29 17:39:22.285525 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-29 17:39:29.301419 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:39:32.801715 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:39:36.623338 gimli2 338813 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=345652 on localhost:11333 at 17:39:36.982
2025-12-29 17:39:41.027718 gimli2 338813 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.404 s.
2025-12-29 17:39:41.097658 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:39:44.907178 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:39:48.578456 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-29 17:39:52.563564 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:39:56.068083 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:39:59.824466 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:40:02.318351 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:02.362739 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:40:06.256512 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.276092 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.295797 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.337323 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.375356 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.41238 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.446122 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:06.486809 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:40:10.372435 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
starting worker pid=353325 on localhost:11333 at 17:40:10.857
starting worker pid=353324 on localhost:11333 at 17:40:10.857
2025-12-29 17:40:19.511773 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:40:22.975496 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:22.983312 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 17:40:22.988071 gimli2 338813 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=357744 on localhost:11333 at 17:40:23.373
2025-12-29 17:40:27.990272 gimli2 338813 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5 s.} ...
2025-12-29 17:40:27.997972 gimli2 338813 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=358548 on localhost:11333 at 17:40:28.520
2025-12-29 17:40:32.909247 gimli2 338813 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.911 s.
2025-12-29 17:40:32.911881 gimli2 338813 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=359636 on localhost:11333 at 17:40:33.444
2025-12-29 17:40:38.372958 gimli2 338813 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.46100000000001 s.
2025-12-29 17:40:38.375262 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 15.392 s.
2025-12-29 17:40:38.385222 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:38.393312 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 17:40:38.429515 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:38.443018 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 17:40:38.602535 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:38.614917 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 17:40:38.634073 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:40:41.060341 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:41.075566 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 17:40:41.113685 gimli2 338813 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 32
2025-12-29 17:40:41.128603 gimli2 338813 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 17:40:41.20668 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-29 17:40:44.901759 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:40:48.441646 gimli2 338813 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=364161 on localhost:11333 at 17:40:48.839
2025-12-29 17:40:52.889262 gimli2 338813 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.44800000000001 s.
2025-12-29 17:40:52.891652 gimli2 338813 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=364964 on localhost:11333 at 17:40:53.280
2025-12-29 17:40:58.173276 gimli2 338813 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.282 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-29 17:40:58.289969 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:41:00.773738 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:41:04.557523 gimli2 338813 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=368269 on localhost:11333 at 17:41:05.148
2025-12-29 17:41:09.428642 gimli2 338813 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.87100000000001 s.
2025-12-29 17:41:09.487396 gimli2 338813 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 17:41:13.29896 gimli2 338813 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=371103 on localhost:11333 at 17:41:13.839
2025-12-29 17:41:20.225284 gimli2 338813 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.92400000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [75s/118s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-01 13:24:50.14624 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-01 13:24:54.878902 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-01 13:24:59.07335 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-01 13:25:06.34837 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:10.512071 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:15.143019 gimli1 2530452 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2551879 on localhost:11461 at 13:25:15.507
2026-01-01 13:25:18.612159 gimli1 2530452 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.469 s.
2026-01-01 13:25:18.67049 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:22.694604 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:26.82302 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-01 13:25:31.599454 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:35.448593 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:37.95031 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:40.251519 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:40.295149 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:44.765954 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:44.797771 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:44.823881 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:44.861748 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:44.897393 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:44.933539 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:44.9701 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:25:45.002874 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:25:48.641086 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
starting worker pid=2582484 on localhost:11461 at 13:25:48.977
starting worker pid=2582485 on localhost:11461 at 13:25:49.032
2026-01-01 13:25:56.103049 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:26:00.485298 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:26:00.509542 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 13:26:00.516737 gimli1 2530452 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2591150 on localhost:11461 at 13:26:00.842
2026-01-01 13:26:04.019167 gimli1 2530452 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.50099999999999 s.} ...
2026-01-01 13:26:04.021142 gimli1 2530452 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2594152 on localhost:11461 at 13:26:04.366
2026-01-01 13:26:06.888097 gimli1 2530452 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.86699999999999 s.
2026-01-01 13:26:06.896068 gimli1 2530452 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2597766 on localhost:11461 at 13:26:07.216
2026-01-01 13:26:10.813878 gimli1 2530452 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.917 s.
2026-01-01 13:26:10.815614 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 10.306 s.
2026-01-01 13:26:10.824594 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:26:10.843691 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 13:26:10.854856 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:26:10.86963 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 13:26:10.944817 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:26:10.965473 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 13:26:10.978683 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:26:13.363173 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:26:13.385469 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 13:26:13.400023 gimli1 2530452 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 64
2026-01-01 13:26:13.42134 gimli1 2530452 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 13:26:13.455305 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-01 13:26:16.789455 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:26:20.115645 gimli1 2530452 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2615151 on localhost:11461 at 13:26:20.469
2026-01-01 13:26:23.001466 gimli1 2530452 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.886 s.
2026-01-01 13:26:23.003435 gimli1 2530452 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2619956 on localhost:11461 at 13:26:23.347
2026-01-01 13:26:26.576061 gimli1 2530452 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.572 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-01 13:26:26.670479 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:26:29.308984 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:26:32.944578 gimli1 2530452 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2633131 on localhost:11461 at 13:26:33.252
2026-01-01 13:26:35.454763 gimli1 2530452 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.50999999999999 s.
2026-01-01 13:26:35.479878 gimli1 2530452 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 13:26:39.274253 gimli1 2530452 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2641311 on localhost:11461 at 13:26:39.577
2026-01-01 13:26:43.676115 gimli1 2530452 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.40000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [145s/444s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-26 22:49:08.4103 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-26 22:49:24.530401 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-26 22:49:36.110408 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-26 22:50:02.79345 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:50:13.784366 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:50:28.8768 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=627396 on localhost:11507 at 22:50:29.471
2025-12-26 22:50:42.152785 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 13.276 s.
2025-12-26 22:50:42.419077 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:50:55.679208 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:51:07.701552 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-26 22:51:19.569707 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:51:32.756306 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:51:44.448699 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:51:52.77544 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:51:52.858649 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:52:08.270106 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.316254 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.35639 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.396866 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.467737 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.497675 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.565941 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.646268 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:52:23.496615 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
starting worker pid=634692 on localhost:11507 at 22:52:24.242
starting worker pid=634693 on localhost:11507 at 22:52:24.504
2025-12-26 22:52:53.845146 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:53:06.752936 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:06.782396 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:06.811966 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=636813 on localhost:11507 at 22:53:07.285
2025-12-26 22:53:21.398103 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 14.574 s.} ...
2025-12-26 22:53:21.406602 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=637217 on localhost:11507 at 22:53:22.280
2025-12-26 22:53:37.428914 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 16.022 s.
2025-12-26 22:53:37.437695 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=637846 on localhost:11507 at 22:53:38.437
2025-12-26 22:53:57.123574 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.686 s.
2025-12-26 22:53:57.131742 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 50.349 s.
2025-12-26 22:53:57.153689 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:57.198775 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:57.281587 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:57.322799 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:57.656408 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:57.698889 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:57.784009 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:54:06.698689 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:54:06.728137 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:54:06.801253 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:54:06.836365 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:54:07.032869 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-26 22:54:16.907442 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:54:33.277739 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=639666 on localhost:11507 at 22:54:34.444
2025-12-26 22:54:47.260752 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 13.9829999999999 s.
2025-12-26 22:54:47.276225 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=639896 on localhost:11507 at 22:54:48.609
2025-12-26 22:55:04.743584 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 17.467 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-26 22:55:05.118037 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:55:16.083339 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:55:33.816705 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=641447 on localhost:11507 at 22:55:35.264
2025-12-26 22:55:46.365098 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.548 s.
2025-12-26 22:55:46.506912 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:55:57.147409 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=642520 on localhost:11507 at 22:55:58.115
2025-12-26 22:56:13.640608 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 16.49 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-26 21:33:55.840385 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-26 21:34:00.052228 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-26 21:34:03.902132 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-26 21:34:10.884909 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:14.564908 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:18.318578 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=352362 on localhost:11272 at 21:34:18.559
2025-12-26 21:34:21.898304 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.58 s.
2025-12-26 21:34:21.977029 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:25.689109 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:29.421248 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-26 21:34:33.276237 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:36.881544 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:39.945741 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:42.519772 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:42.572495 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:46.183951 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.20463 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.224972 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.288745 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.307164 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.337418 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.356911 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.390907 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:50.330351 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
starting worker pid=353309 on localhost:11272 at 21:34:50.585
starting worker pid=353308 on localhost:11272 at 21:34:50.695
2025-12-26 21:34:59.152366 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:02.81662 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:02.825443 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:02.829801 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=353684 on localhost:11272 at 21:35:03.055
2025-12-26 21:35:06.872823 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.04100000000001 s.} ...
2025-12-26 21:35:06.876792 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=354064 on localhost:11272 at 21:35:07.102
2025-12-26 21:35:10.378599 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.50200000000001 s.
2025-12-26 21:35:10.382573 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=354193 on localhost:11272 at 21:35:10.607
2025-12-26 21:35:14.844632 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.462 s.
2025-12-26 21:35:14.847958 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.022 s.
2025-12-26 21:35:14.854364 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:14.864361 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:14.888284 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:14.898342 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:14.948302 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:14.957616 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:14.969902 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:17.484851 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:17.498242 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:17.542117 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:17.554885 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:17.594354 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-26 21:35:21.310148 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:24.969155 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=354405 on localhost:11272 at 21:35:25.203
2025-12-26 21:35:28.587647 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.61799999999999 s.
2025-12-26 21:35:28.589926 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=354464 on localhost:11272 at 21:35:28.817
2025-12-26 21:35:32.682988 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.093 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-26 21:35:32.749885 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:35.317426 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:38.918335 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=354731 on localhost:11272 at 21:35:39.219
2025-12-26 21:35:42.573676 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.655 s.
2025-12-26 21:35:42.60984 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:46.405771 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=354905 on localhost:11272 at 21:35:46.642
2025-12-26 21:35:51.242068 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.833 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [138s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-28 08:07:14.983295 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-28 08:07:20.761603 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-28 08:07:26.256556 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-28 08:07:34.62888 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:40.061649 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:45.520758 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57576 on localhost:11962 at 08:07:45.797
2025-12-28 08:07:48.273229 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s.
2025-12-28 08:07:48.30742 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:53.609794 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:58.723841 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-28 08:08:04.001682 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:09.158044 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:12.430488 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:16.4253 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:16.442885 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:21.85535 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.863912 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.872194 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.884614 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.896352 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.908764 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.921765 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.939867 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:26.679342 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
starting worker pid=98488 on localhost:11962 at 08:08:26.914
starting worker pid=74240 on localhost:11962 at 08:08:26.951
2025-12-28 08:08:33.251411 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:38.451837 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:38.454274 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:38.457405 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=42448 on localhost:11962 at 08:08:38.678
2025-12-28 08:08:41.530292 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.06 s.} ...
2025-12-28 08:08:41.533111 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=75936 on localhost:11962 at 08:08:41.804
2025-12-28 08:08:44.169725 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.64 s.
2025-12-28 08:08:44.171978 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=18388 on localhost:11962 at 08:08:44.433
2025-12-28 08:08:47.46496 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.28999999999999 s.
2025-12-28 08:08:47.46755 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.00999999999999 s.
2025-12-28 08:08:47.472283 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.474993 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.488424 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.491324 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.525316 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.528052 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.538139 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:51.739838 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:51.742298 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:51.752914 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:51.7552 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:51.785591 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-28 08:08:57.012718 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:02.290384 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=106096 on localhost:11962 at 08:09:02.538
2025-12-28 08:09:05.114394 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.83 s.
2025-12-28 08:09:05.11712 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=88036 on localhost:11962 at 08:09:05.400
2025-12-28 08:09:08.255834 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.14 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-28 08:09:08.303428 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:12.520372 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:17.735925 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=87524 on localhost:11962 at 08:09:17.949
2025-12-28 08:09:20.30537 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.58 s.
2025-12-28 08:09:20.33904 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:25.637269 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=16280 on localhost:11962 at 08:09:25.880
2025-12-28 08:09:29.107894 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.46000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/159s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-31 05:51:37.065154 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-31 05:51:42.478396 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-31 05:51:48.09118 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-31 05:51:56.987226 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:01.769045 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:07.119879 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=282814 on localhost:11834 at 05:52:07.538
2025-12-31 05:52:11.707957 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.588 s.
2025-12-31 05:52:11.803711 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:16.506167 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:22.068821 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-31 05:52:29.106988 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:34.541048 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:38.569597 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:41.964602 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:41.984196 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:46.895425 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:46.927531 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:46.9538 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:46.987125 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.019147 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.055639 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.087324 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.121603 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:51.812376 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
starting worker pid=293951 on localhost:11834 at 05:52:52.211
starting worker pid=293950 on localhost:11834 at 05:52:52.239
2025-12-31 05:53:01.383796 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:06.536372 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:06.548104 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:06.552353 gimli2 272625 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=298127 on localhost:11834 at 05:53:06.995
2025-12-31 05:53:11.609254 gimli2 272625 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.05099999999999 s.} ...
2025-12-31 05:53:11.611636 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=299590 on localhost:11834 at 05:53:12.039
2025-12-31 05:53:15.95726 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.346 s.
2025-12-31 05:53:15.959813 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=300761 on localhost:11834 at 05:53:16.418
2025-12-31 05:53:21.684875 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.72499999999999 s.
2025-12-31 05:53:21.687026 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 15.139 s.
2025-12-31 05:53:21.695373 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:21.707232 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:21.738234 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:21.749171 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:21.818922 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:21.831198 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:21.84898 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:26.128451 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:26.138744 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:26.170421 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:26.183431 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:26.253613 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-31 05:53:32.030399 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:37.859029 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=306572 on localhost:11834 at 05:53:38.182
2025-12-31 05:53:41.779016 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.91999999999999 s.
2025-12-31 05:53:41.781405 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=307217 on localhost:11834 at 05:53:42.267
2025-12-31 05:53:46.955048 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.173 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-31 05:53:47.064667 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:51.230833 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:56.652967 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=310940 on localhost:11834 at 05:53:57.041
2025-12-31 05:54:00.706646 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.05799999999999 s.
2025-12-31 05:54:00.771285 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:54:05.411923 gimli2 272625 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=314006 on localhost:11834 at 05:54:05.730
2025-12-31 05:54:11.027203 gimli2 272625 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.613 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-27 05:42:19.104377 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-27 05:42:25.979498 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-27 05:42:31.96309 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-27 05:42:40.992554 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:42:46.24367 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:42:52.037609 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=844849 on localhost:11984 at 05:42:52.401
2025-12-27 05:42:57.404636 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.367 s.
2025-12-27 05:42:57.478066 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:03.019006 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:09.436839 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-27 05:43:15.234072 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:19.998547 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:24.004356 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:27.770642 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:27.803351 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:32.782964 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.822962 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.858173 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.894551 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.926379 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.956248 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.997803 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:33.035219 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:38.537569 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
starting worker pid=857200 on localhost:11984 at 05:43:38.888
starting worker pid=857201 on localhost:11984 at 05:43:38.983
2025-12-27 05:43:47.262992 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:52.127838 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:52.143196 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:43:52.152311 gimli2 832655 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=861193 on localhost:11984 at 05:43:52.544
2025-12-27 05:43:57.366121 gimli2 832655 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.208 s.} ...
2025-12-27 05:43:57.368708 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=862605 on localhost:11984 at 05:43:57.766
2025-12-27 05:44:02.452229 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.083 s.
2025-12-27 05:44:02.460178 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=863635 on localhost:11984 at 05:44:02.818
2025-12-27 05:44:08.661345 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.20100000000001 s.
2025-12-27 05:44:08.663622 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 16.52 s.
2025-12-27 05:44:08.672938 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:08.681226 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:08.705635 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:08.719112 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:08.797773 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:08.811455 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:08.849041 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:12.414136 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:12.427572 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:12.460131 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:12.473627 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:12.545711 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-27 05:44:17.674585 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:22.394511 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=868365 on localhost:11984 at 05:44:22.770
2025-12-27 05:44:26.95224 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.55800000000002 s.
2025-12-27 05:44:26.954828 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=869330 on localhost:11984 at 05:44:27.490
2025-12-27 05:44:31.782852 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.828 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-27 05:44:31.846953 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:36.530302 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:42.545933 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=873507 on localhost:11984 at 05:44:42.939
2025-12-27 05:44:46.553329 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.00700000000001 s.
2025-12-27 05:44:46.583067 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:52.246751 gimli2 832655 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=876621 on localhost:11984 at 05:44:52.683
2025-12-27 05:44:58.126549 gimli2 832655 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.87699999999998 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [139s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-30 08:08:14.182268 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-30 08:08:20.325994 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-30 08:08:25.799113 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-30 08:08:34.108032 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:39.390525 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:44.768944 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=94644 on localhost:11160 at 08:08:45.034
2025-12-30 08:08:47.553555 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77999999999999 s.
2025-12-30 08:08:47.593273 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:52.351681 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:57.394154 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-30 08:09:02.658722 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:07.402854 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:11.123077 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:15.259742 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:15.274969 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:20.558825 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.571301 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.583354 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.595873 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.608872 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.622789 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.636492 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.65132 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:25.862618 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
starting worker pid=83740 on localhost:11160 at 08:09:26.080
starting worker pid=45912 on localhost:11160 at 08:09:26.114
2025-12-30 08:09:32.449658 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:37.663107 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:37.666264 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:37.67101 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=68052 on localhost:11160 at 08:09:37.945
2025-12-30 08:09:40.705235 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.04000000000001 s.} ...
2025-12-30 08:09:40.708325 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=20832 on localhost:11160 at 08:09:40.979
2025-12-30 08:09:43.382665 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.66999999999999 s.
2025-12-30 08:09:43.38544 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=41104 on localhost:11160 at 08:09:43.643
2025-12-30 08:09:46.776338 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.39 s.
2025-12-30 08:09:46.779217 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.11 s.
2025-12-30 08:09:46.784163 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:46.786905 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:46.8003 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:46.802989 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:46.833863 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:46.835928 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:46.845323 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:50.895351 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:50.898243 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:50.908879 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:50.910907 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:50.946792 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-30 08:09:56.11001 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:01.382585 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=72996 on localhost:11160 at 08:10:01.642
2025-12-30 08:10:04.190579 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.80000000000001 s.
2025-12-30 08:10:04.193182 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=41724 on localhost:11160 at 08:10:04.416
2025-12-30 08:10:07.333802 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.14 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-30 08:10:07.408224 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:11.800842 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:17.375875 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=44860 on localhost:11160 at 08:10:17.623
2025-12-30 08:10:20.299313 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.91999999999999 s.
2025-12-30 08:10:20.332435 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:25.736205 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=55612 on localhost:11160 at 08:10:25.992
2025-12-30 08:10:29.293153 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.56 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [209s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-30 01:53:33.973196 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-30 01:53:42.98931 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-30 01:53:51.938861 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-30 01:54:04.341498 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:54:12.819981 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:54:20.864573 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=18676 on localhost:11280 at 01:54:21.210
2025-12-30 01:54:24.633356 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.77 s.
2025-12-30 01:54:24.693218 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:54:32.759968 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:54:41.059239 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-30 01:54:49.728521 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:54:57.545538 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:02.506011 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:55:09.442406 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:09.462283 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:55:17.780546 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.797957 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.815313 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.832369 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.849975 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.862806 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.87555 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:17.896538 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:55:26.208307 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=8368 on localhost:11280 at 01:55:26.529
starting worker pid=57616 on localhost:11280 at 01:55:26.537
2025-12-30 01:55:35.496499 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:55:43.672709 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:43.675137 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 01:55:43.678815 CRANWIN2 18412 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=113388 on localhost:11280 at 01:55:43.976
2025-12-30 01:55:47.876997 CRANWIN2 18412 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.21000000000001 s.} ...
2025-12-30 01:55:47.879228 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=50964 on localhost:11280 at 01:55:48.196
2025-12-30 01:55:51.528223 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.64999999999998 s.
2025-12-30 01:55:51.531865 CRANWIN2 18412 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=48388 on localhost:11280 at 01:55:51.899
2025-12-30 01:55:56.574569 CRANWIN2 18412 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.05000000000001 s.
2025-12-30 01:55:56.5779 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.91 s.
2025-12-30 01:55:56.584311 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:56.587993 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 01:55:56.603023 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:56.605882 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 01:55:56.652598 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:55:56.656898 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 01:55:56.678825 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:56:03.225262 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:56:03.228689 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 01:56:03.243706 CRANWIN2 18412 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-30 01:56:03.246219 CRANWIN2 18412 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 01:56:03.286477 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-30 01:56:11.131383 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:56:19.083846 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=39556 on localhost:11280 at 01:56:19.435
2025-12-30 01:56:22.488947 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.40000000000001 s.
2025-12-30 01:56:22.491216 CRANWIN2 18412 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=11508 on localhost:11280 at 01:56:22.846
2025-12-30 01:56:26.574324 CRANWIN2 18412 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.09999999999999 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-30 01:56:26.655466 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:56:33.395537 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:56:41.246985 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=67920 on localhost:11280 at 01:56:41.603
2025-12-30 01:56:45.095801 CRANWIN2 18412 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.84 s.
2025-12-30 01:56:45.143019 CRANWIN2 18412 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 01:56:53.259596 CRANWIN2 18412 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=98232 on localhost:11280 at 01:56:53.605
2025-12-30 01:56:58.425995 CRANWIN2 18412 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.15000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64