Last updated on 2026-03-27 02:51:31 CET.
| Package | ERROR | OK |
|---|---|---|
| duckspatial | 9 | 5 |
| OTBsegm | 14 | |
| rpostgis | 1 | 13 |
| silviculture | 14 |
Current CRAN status: ERROR: 9, OK: 5
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckspatial/spatial/countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckspatial/spatial/argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckspatial/spatial/rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
Saving _problems/test-compatibility-28.R
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
Saving _problems/test-compatibility-63.R
v Temporary view rt_register_line registered
Saving _problems/test-compatibility-92.R
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘aw_interpolation.Rmd’ using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_geom_name()`:
! The table <temp_view_23a7930e_9271_486b_baec_b3baf991047f> does not
exist.
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial:::get_geom_name(conn, t_list$query_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
The table <temp_view_23a7930e_9271_486b_baec_b3baf991047f> does not
exist.
--- failed re-building ‘aw_interpolation.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘duckspatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘duckspatial.Rmd’
--- re-building ‘spatial_joins.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘spatial_joins.Rmd’
SUMMARY: processing the following file failed:
‘aw_interpolation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckspatial/spatial/countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckspatial/spatial/argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckspatial/spatial/rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
v Arrow view view_test successfully imported.
i Table <table_test> dropped
v Table table_test successfully imported
v table table_test successfully imported.
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
v table rt_write_line successfully imported.
i Table <rt_write_polygon> dropped
v Table rt_write_polygon successfully imported
v table rt_write_polygon successfully imported.
i Table <rt_write_multipoint> dropped
v Table rt_write_multipoint successfully imported
v table rt_write_multipoint successfully imported.
v Temporary view rt_register_line registered
v Arrow view rt_register_line successfully imported.
v Temporary view rt_register_polygon registered
v Arrow view rt_register_polygon successfully imported.
v Temporary view rt_register_multipoint registered
v Arrow view rt_register_multipoint successfully imported.
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 1 | WARN 2 | SKIP 17 | PASS 31 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `ddbs_read_vector(conn, table_name)`: Geometry column wasn't found in table <countries_from_file_compat>.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─cli::cli_abort("Geometry column wasn't found in table <{name_list$query_name}>.")
3. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 17 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/323s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
[gannet:2552060:0:2552060] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x449)
==== backtrace (tid:2552060) ====
0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7ff088db2df4]
1 /lib64/libucs.so.0(+0x17aed) [0x7ff088db4aed]
2 /lib64/libucs.so.0(+0x17cbd) [0x7ff088db4cbd]
3 /lib64/libc.so.6(+0x1a040) [0x7ff0a1128040]
4 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x11717f0) [0x7fef68d717f0]
5 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x11442a8) [0x7fef68d442a8]
6 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x758844) [0x7fef68358844]
7 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x756bd9) [0x7fef68356bd9]
8 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper29LoadExternalExtensionInternalERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEERNS_19ExtensionActiveLoadE+0x195) [0x7ff08d079825]
9 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper21LoadExternalExtensionERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEE+0x4a) [0x7ff08d0795ca]
10 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZNK6duckdb12PhysicalLoad15GetDataInternalERNS_16ExecutionContextERNS_9DataChunkERNS_19OperatorSourceInputE+0x151) [0x7ff08de6c831]
11 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor15FetchFromSourceERNS_9DataChunkE+0x9b) [0x7ff08e693fdb]
12 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor7ExecuteEm+0x146) [0x7ff08e690bb6]
13 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12PipelineTask11ExecuteTaskENS_17TaskExecutionModeE+0x112) [0x7ff08e6907e2]
14 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12ExecutorTask7ExecuteENS_17TaskExecutionModeE+0xa0) [0x7ff08e68a5a0]
15 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb8Executor11ExecuteTaskEb+0x1c0) [0x7ff08e68f7e0]
16 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb13ClientContext19ExecuteTaskInternalERNS_17ClientContextLockERNS_15BaseQueryResultEb+0x40) [0x7ff08e4a0ea0]
17 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb18PendingQueryResult15ExecuteInternalERNS_17ClientContextLockE+0x7a) [0x7ff08e4a356a]
18 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb13ClientContext7ExecuteERKNSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEERNS_10shared_ptrINS_21PreparedStatementDataELb1EEERKNS_22PendingQueryParametersE+0xa0) [0x7ff08e4a32b0]
19 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb17PreparedStatement7ExecuteERNSt3__113unordered_mapINS1_12basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEENS_18BoundParameterDataENS_33CaseInsensitiveStringHashFunctionENS_29CaseInsensitiveStringEqualityENS6_INS1_4pairIKS8_S9_EEEEEEb+0x1c3) [0x7ff08e4c63c3]
20 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb17PreparedStatement7ExecuteERNS_6vectorINS_5ValueELb1ENSt3__19allocatorIS2_EEEEb+0x172) [0x7ff08e4c6662]
21 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_Z12rapi_executeN5cpp1116external_pointerIN6duckdb10RStatementEXadL_ZNS_15default_deleterIS2_EEvPT_EEEENS1_11ConvertOptsE+0x115) [0x7ff08cd07d75]
22 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_execute+0x66) [0x7ff08cd704b6]
23 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f384) [0x560ccc97f384]
24 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdaad8) [0x560ccc9caad8]
25 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8c2c) [0x560ccc9b8c2c]
26 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x560ccc9b83b5]
27 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8e84) [0x560ccc9b8e84]
28 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x560ccc9b847e]
29 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8e84) [0x560ccc9b8e84]
30 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdcbe0) [0x560ccc9ccbe0]
31 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcd2b9) [0x560ccc9bd2b9]
32 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8c2c) [0x560ccc9b8c2c]
33 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x560ccc9b83b5]
34 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0449) [0x560ccc9d0449]
35 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf94c) [0x560ccc9cf94c]
36 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x560ccc9b8806]
37 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8e84) [0x560ccc9b8e84]
38 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdcbe0) [0x560ccc9ccbe0]
39 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcd2b9) [0x560ccc9bd2b9]
40 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8c2c) [0x560ccc9b8c2c]
41 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x560ccc9b83b5]
42 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0449) [0x560ccc9d0449]
43 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf94c) [0x560ccc9cf94c]
44 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x560ccc9b8806]
45 /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7ff09eacc7d3]
46 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x560ccc97d4d3]
47 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf8a4) [0x560ccc9bf8a4]
48 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8c2c) [0x560ccc9b8c2c]
49 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x560ccc9b83b5]
50 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0449) [0x560ccc9d0449]
51 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf94c) [0x560ccc9cf94c]
52 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x560ccc9b8806]
53 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5978) [0x560ccc9d5978]
54 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x560ccc9b85e0]
55 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4abb) [0x560ccc9d4abb]
56 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x560ccc9b85e0]
57 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0449) [0x560ccc9d0449]
58 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf94c) [0x560ccc9cf94c]
59 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf133) [0x560ccc9bf133]
60 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8c2c) [0x560ccc9b8c2c]
61 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x560ccc9b83b5]
=================================
*** caught segfault ***
address 0x4d20026f0fc, cause 'unknown'
Traceback:
1: rapi_execute(stmt, convert_opts)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_execute(stmt, convert_opts), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_execute(res@stmt_lst$ref, duckdb_convert_opts_impl(res@connection@convert_opts, arrow = res@arrow))
9: duckdb_execute(res)
10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11: .local(conn, statement, ...)
12: dbSendQuery(conn, statement, ...)
13: dbSendQuery(conn, statement, ...)
14: dbSendStatement(conn, statement, ...)
15: dbSendStatement(conn, statement, ...)
16: DBI::dbExecute(conn, "LOAD spatial;")
17: DBI::dbExecute(conn, "LOAD spatial;")
18: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
19: suppressMessages(DBI::dbExecute(conn, "LOAD spatial;"))
20: duckspatial::ddbs_load(conn, quiet = TRUE)
21: ddbs_create_conn("memory")
22: eval(code, test_env)
23: eval(code, test_env)
24: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
25: doTryCatch(return(expr), name, parentenv, handler)
26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
27: tryCatchList(expr, classes, parentenv, handlers)
28: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
29: doWithOneRestart(return(expr), restart)
30: withOneRestart(expr, restarts[[1L]])
31: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
32: test_code(code, parent.frame())
33: test_that("Compatibility: Arrow Views behave like Persistent Tables", { skip_if_not_installed("duckdb") conn <- ddbs_create_conn("memory") on.exit(ddbs_stop_conn(conn), add = TRUE) data_sf <- sf::st_as_sf(data.frame(id = 1:5, x = 0, y = 0, val = letters[1:5]), coords = c("x", "y"), crs = 4326) expect_no_error(ddbs_register_vector(conn, data_sf, "view_test", overwrite = TRUE)) expect_no_error(crs_out <- ddbs_crs(conn, "view_test")) expect_equal(crs_out, sf::st_crs(4326)) read_view <- ddbs_read_vector(conn, "view_test", crs = 4326) expect_s3_class(read_view, "sf") expect_equal(nrow(read_view), 5) ddbs_write_vector(conn, data_sf, "table_test", overwrite = TRUE) read_table <- ddbs_read_vector(conn, "table_test", crs = 4326) expect_equal(sf::st_drop_geometry(read_view), sf::st_drop_geometry(read_table)) expect_equal(sf::st_geometry(read_view), sf::st_geometry(read_table)) })
34: eval(code, test_env)
35: eval(code, test_env)
36: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
37: doTryCatch(return(expr), name, parentenv, handler)
38: tryCatchOne(expr, names, parentenv, handlers[[1L]])
39: tryCatchList(expr, classes, parentenv, handlers)
40: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
41: doWithOneRestart(return(expr), restart)
42: withOneRestart(expr, restarts[[1L]])
43: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
44: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
45: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
46: FUN(X[[i]], ...)
47: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
48: doTryCatch(return(expr), name, parentenv, handler)
49: tryCatchOne(expr, names, parentenv, handlers[[1L]])
50: tryCatchList(expr, classes, parentenv, handlers)
51: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
52: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
53: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
54: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
55: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
56: test_check("duckspatial")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘aw_interpolation.Rmd’ using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial::ddbs_create_conn()
3. └─duckspatial::ddbs_load(conn, quiet = TRUE)
4. ├─base::suppressMessages(DBI::dbExecute(conn, "LOAD spatial;"))
5. │ └─base::withCallingHandlers(...)
6. ├─DBI::dbExecute(conn, "LOAD spatial;")
7. └─DBI::dbExecute(conn, "LOAD spatial;")
8. ├─DBI::dbSendStatement(conn, statement, ...)
9. └─DBI::dbSendStatement(conn, statement, ...)
10. ├─DBI::dbSendQuery(conn, statement, ...)
11. └─duckdb::dbSendQuery(conn, statement, ...)
12. └─duckdb (local) .local(conn, statement, ...)
13. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘aw_interpolation.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘duckspatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘duckspatial.Rmd’
--- re-building ‘spatial_joins.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘spatial_joins.Rmd’
SUMMARY: processing the following file failed:
‘aw_interpolation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/159s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`/data/gannet/ripley/R/packages/tests-devel/duckspatial.Rcheck/duckspatial/spatial/countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`/data/gannet/ripley/R/packages/tests-devel/duckspatial.Rcheck/duckspatial/spatial/argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`/data/gannet/ripley/R/packages/tests-devel/duckspatial.Rcheck/duckspatial/spatial/rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
v Arrow view view_test successfully imported.
i Table <table_test> dropped
v Table table_test successfully imported
v table table_test successfully imported.
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
v table rt_write_line successfully imported.
i Table <rt_write_polygon> dropped
v Table rt_write_polygon successfully imported
v table rt_write_polygon successfully imported.
i Table <rt_write_multipoint> dropped
v Table rt_write_multipoint successfully imported
v table rt_write_multipoint successfully imported.
v Temporary view rt_register_line registered
v Arrow view rt_register_line successfully imported.
v Temporary view rt_register_polygon registered
v Arrow view rt_register_polygon successfully imported.
v Temporary view rt_register_multipoint registered
v Arrow view rt_register_multipoint successfully imported.
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 1 | WARN 2 | SKIP 17 | PASS 31 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `ddbs_read_vector(conn, table_name)`: Geometry column wasn't found in table <countries_from_file_compat>.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─cli::cli_abort("Geometry column wasn't found in table <{name_list$query_name}>.")
3. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 17 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.9.0
Check: tests
Result: ERROR
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`D:\RCompile\CRANpkg\lib\4.6\duckspatial\spatial\countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`D:\RCompile\CRANpkg\lib\4.6\duckspatial\spatial\argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`D:\RCompile\CRANpkg\lib\4.6\duckspatial\spatial\rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
Saving _problems/test-compatibility-28.R
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
Saving _problems/test-compatibility-63.R
v Temporary view rt_register_line registered
Saving _problems/test-compatibility-92.R
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'aw_interpolation.Rmd' using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_geom_name()`:
! The table <temp_view_c9611cab_edd9_401d_86e5_4a83e5a2718f> does not
exist.
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial:::get_geom_name(conn, t_list$query_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
The table <temp_view_c9611cab_edd9_401d_86e5_4a83e5a2718f> does not
exist.
--- failed re-building 'aw_interpolation.Rmd'
--- re-building 'benchmark.Rmd' using rmarkdown
--- finished re-building 'benchmark.Rmd'
--- re-building 'duckspatial.Rmd' using rmarkdown
--- finished re-building 'duckspatial.Rmd'
--- re-building 'spatial_joins.Rmd' using rmarkdown
--- finished re-building 'spatial_joins.Rmd'
SUMMARY: processing the following file failed:
'aw_interpolation.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckspatial/spatial/countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckspatial/spatial/argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckspatial/spatial/rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
Saving _problems/test-compatibility-28.R
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
Saving _problems/test-compatibility-63.R
v Temporary view rt_register_line registered
Saving _problems/test-compatibility-92.R
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘aw_interpolation.Rmd’ using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_geom_name()`:
! The table <temp_view_92cee292_3158_4205_92a1_916d96c236f4> does not
exist.
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial:::get_geom_name(conn, t_list$query_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
The table <temp_view_92cee292_3158_4205_92a1_916d96c236f4> does not
exist.
--- failed re-building ‘aw_interpolation.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘duckspatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘duckspatial.Rmd’
--- re-building ‘spatial_joins.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘spatial_joins.Rmd’
SUMMARY: processing the following file failed:
‘aw_interpolation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckspatial/spatial/countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckspatial/spatial/argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckspatial/spatial/rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
Saving _problems/test-compatibility-28.R
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
Saving _problems/test-compatibility-63.R
v Temporary view rt_register_line registered
Saving _problems/test-compatibility-92.R
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘aw_interpolation.Rmd’ using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_geom_name()`:
! The table <temp_view_23ef28d3_bc27_4ab1_a89b_a7e1b8b951ed> does not
exist.
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial:::get_geom_name(conn, t_list$query_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
The table <temp_view_23ef28d3_bc27_4ab1_a89b_a7e1b8b951ed> does not
exist.
--- failed re-building ‘aw_interpolation.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘duckspatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘duckspatial.Rmd’
--- re-building ‘spatial_joins.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘spatial_joins.Rmd’
SUMMARY: processing the following file failed:
‘aw_interpolation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.9.0
Check: tests
Result: ERROR
Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`D:\RCompile\CRANpkg\lib\4.5\duckspatial\spatial\countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`D:\RCompile\CRANpkg\lib\4.5\duckspatial\spatial\argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`D:\RCompile\CRANpkg\lib\4.5\duckspatial\spatial\rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
Saving _problems/test-compatibility-28.R
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
Saving _problems/test-compatibility-63.R
v Temporary view rt_register_line registered
Saving _problems/test-compatibility-92.R
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'aw_interpolation.Rmd' using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_geom_name()`:
! The table <temp_view_a46a5231_aa2b_4f9f_9081_f84e3e965195> does not
exist.
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial:::get_geom_name(conn, t_list$query_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
The table <temp_view_a46a5231_aa2b_4f9f_9081_f84e3e965195> does not
exist.
--- failed re-building 'aw_interpolation.Rmd'
--- re-building 'benchmark.Rmd' using rmarkdown
--- finished re-building 'benchmark.Rmd'
--- re-building 'duckspatial.Rmd' using rmarkdown
--- finished re-building 'duckspatial.Rmd'
--- re-building 'spatial_joins.Rmd' using rmarkdown
--- finished re-building 'spatial_joins.Rmd'
SUMMARY: processing the following file failed:
'aw_interpolation.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.9.0
Check: tests
Result: ERROR
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckspatial)
Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.
If possible, use the default values of these arguments to avoid future issues.
> library(duckdb)
Loading required package: DBI
>
> test_check("duckspatial")
Reading layer `countries' from data source
`D:\RCompile\CRANpkg\lib\4.4\duckspatial\spatial\countries.geojson'
using driver `GeoJSON'
Simple feature collection with 257 features and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187
Geodetic CRS: WGS 84
Reading layer `argentina' from data source
`D:\RCompile\CRANpkg\lib\4.4\duckspatial\spatial\argentina.geojson'
using driver `GeoJSON'
Simple feature collection with 1 feature and 6 fields
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793
Geodetic CRS: WGS 84
Reading layer `rivers' from data source
`D:\RCompile\CRANpkg\lib\4.4\duckspatial\spatial\rivers.geojson'
using driver `GeoJSON'
Simple feature collection with 100 features and 1 field
Geometry type: LINESTRING
Dimension: XY
Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939
Projected CRS: ETRS89-extended / LAEA Europe
v Temporary view view_test registered
Saving _problems/test-compatibility-28.R
i Table <rt_write_line> dropped
v Table rt_write_line successfully imported
Saving _problems/test-compatibility-63.R
v Temporary view rt_register_line registered
Saving _problems/test-compatibility-92.R
i Table <countries_from_file_compat> dropped
v Table countries_from_file_compat successfully imported
Saving _problems/test-compatibility-112.R
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',
'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',
'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',
'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',
'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',
'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',
'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',
'test-ddbs_union.R:3:1', 'test-utils.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──
Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY
i Context: rapi_prepare
Backtrace:
▆
1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9
2. │ ├─DBI::dbListFields(conn, name_list$query_name)
3. │ └─DBI::dbListFields(conn, name_list$query_name)
4. │ ├─DBI::dbGetQuery(...)
5. │ └─DBI::dbGetQuery(...)
6. │ └─DBI (local) .local(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_prepare(conn, query, env)
18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")
19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
20. │ └─rlang:::signal_abort(cnd, .file)
21. │ └─base::signalCondition(cnd)
22. └─rlang (local) `<fn>`(`<dckdb_rr>`)
23. └─handlers[[1L]](cnd)
24. └─duckdb:::rethrow_error_from_rapi(e, call)
25. └─rlang::abort(msg, call = call)
── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──
Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.
Backtrace:
▆
1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5
2. └─duckspatial:::get_geom_name(conn, name_list$query_name)
3. └─cli::cli_abort("The table <{x}> does not exist.")
4. └─rlang::abort(...)
[ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'aw_interpolation.Rmd' using rmarkdown
Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_geom_name()`:
! The table <temp_view_91d8b3df_2539_452f_bbc0_85bc810cf939> does not
exist.
---
Backtrace:
▆
1. └─duckspatial::ddbs_interpolate_aw(...)
2. └─duckspatial:::get_geom_name(conn, t_list$query_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics:
The table <temp_view_91d8b3df_2539_452f_bbc0_85bc810cf939> does not
exist.
--- failed re-building 'aw_interpolation.Rmd'
--- re-building 'benchmark.Rmd' using rmarkdown
--- finished re-building 'benchmark.Rmd'
--- re-building 'duckspatial.Rmd' using rmarkdown
--- finished re-building 'duckspatial.Rmd'
--- re-building 'spatial_joins.Rmd' using rmarkdown
--- finished re-building 'spatial_joins.Rmd'
SUMMARY: processing the following file failed:
'aw_interpolation.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, OK: 13
Version: 1.6.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘RPostgreSQL’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64
Current CRAN status: OK: 14