Last updated on 2026-06-30 01:51:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 6.90 | 70.13 | 77.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 4.58 | 51.64 | 56.22 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 11.00 | 131.43 | 142.43 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 10.00 | 134.95 | 144.95 | OK | |
| r-devel-windows-x86_64 | 0.1.1 | 10.00 | 98.00 | 108.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.1 | 7.69 | 65.10 | 72.79 | OK | |
| r-release-linux-x86_64 | 0.1.1 | ERROR | ||||
| r-release-macos-arm64 | 0.1.2 | 2.00 | 23.00 | 25.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 5.00 | 78.00 | 83.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 9.00 | 96.00 | 105.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 2.00 | 27.00 | 29.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.2 | 5.00 | 79.00 | 84.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 12.00 | 114.00 | 126.00 | ERROR |
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(clmstan)
Attaching package: 'clmstan'
The following object is masked from 'package:base':
gamma
>
> test_check("clmstan")
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: All OK
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
All Rhat < 1.01 (max: 1.001)
All ESS > 100 (min bulk: 1900, min tail: 1729)
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 10 (WARNING!)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Max treedepth: 5 transitions hit limit
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: Low in chain(s) 1, 2 (WARNING!)
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
Saving _problems/test-loo-waic-263.R
Saving _problems/test-loo-waic-279.R
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-clm_stan.R:24:3', 'test-clm_stan.R:47:3',
'test-clm_stan.R:74:3', 'test-link-sampling.R:50:3',
'test-link-sampling.R:70:3', 'test-link-sampling.R:90:3',
'test-link-sampling.R:110:3', 'test-link-sampling.R:130:3',
'test-link-sampling.R:154:3', 'test-link-sampling.R:180:3',
'test-link-sampling.R:206:3', 'test-link-sampling.R:233:3',
'test-link-sampling.R:259:3', 'test-link-sampling.R:285:3',
'test-link-sampling.R:315:3', 'test-link-sampling.R:342:3',
'test-link-sampling.R:372:3', 'test-link-sampling.R:393:3'
• empty test (5): 'test-model-consistency.R:60:1',
'test-model-consistency.R:83:1', 'test-model-consistency.R:106:1',
'test-model-consistency.R:130:1', 'test-model-consistency.R:161:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-loo-waic.R:263:3'): loo results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-loo-waic.R:279:3'): waic results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(clmstan)
Attaching package: 'clmstan'
The following object is masked from 'package:base':
gamma
>
> test_check("clmstan")
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: All OK
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
All Rhat < 1.01 (max: 1.001)
All ESS > 100 (min bulk: 1900, min tail: 1729)
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 10 (WARNING!)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Max treedepth: 5 transitions hit limit
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: Low in chain(s) 1, 2 (WARNING!)
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
Saving _problems/test-loo-waic-263.R
Saving _problems/test-loo-waic-279.R
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-clm_stan.R:24:3', 'test-clm_stan.R:47:3',
'test-clm_stan.R:74:3', 'test-link-sampling.R:50:3',
'test-link-sampling.R:70:3', 'test-link-sampling.R:90:3',
'test-link-sampling.R:110:3', 'test-link-sampling.R:130:3',
'test-link-sampling.R:154:3', 'test-link-sampling.R:180:3',
'test-link-sampling.R:206:3', 'test-link-sampling.R:233:3',
'test-link-sampling.R:259:3', 'test-link-sampling.R:285:3',
'test-link-sampling.R:315:3', 'test-link-sampling.R:342:3',
'test-link-sampling.R:372:3', 'test-link-sampling.R:393:3'
• empty test (5): 'test-model-consistency.R:60:1',
'test-model-consistency.R:83:1', 'test-model-consistency.R:106:1',
'test-model-consistency.R:130:1', 'test-model-consistency.R:161:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-loo-waic.R:263:3'): loo results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-loo-waic.R:279:3'): waic results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(clmstan)
Attaching package: 'clmstan'
The following object is masked from 'package:base':
gamma
>
> test_check("clmstan")
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: All OK
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
All Rhat < 1.01 (max: 1.001)
All ESS > 100 (min bulk: 1900, min tail: 1729)
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 10 (WARNING!)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Max treedepth: 5 transitions hit limit
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: Low in chain(s) 1, 2 (WARNING!)
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
Saving _problems/test-loo-waic-263.R
Saving _problems/test-loo-waic-279.R
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-clm_stan.R:24:3', 'test-clm_stan.R:47:3',
'test-clm_stan.R:74:3', 'test-link-sampling.R:50:3',
'test-link-sampling.R:70:3', 'test-link-sampling.R:90:3',
'test-link-sampling.R:110:3', 'test-link-sampling.R:130:3',
'test-link-sampling.R:154:3', 'test-link-sampling.R:180:3',
'test-link-sampling.R:206:3', 'test-link-sampling.R:233:3',
'test-link-sampling.R:259:3', 'test-link-sampling.R:285:3',
'test-link-sampling.R:315:3', 'test-link-sampling.R:342:3',
'test-link-sampling.R:372:3', 'test-link-sampling.R:393:3'
• empty test (5): 'test-model-consistency.R:60:1',
'test-model-consistency.R:83:1', 'test-model-consistency.R:106:1',
'test-model-consistency.R:130:1', 'test-model-consistency.R:161:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-loo-waic.R:263:3'): loo results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-loo-waic.R:279:3'): waic results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(clmstan)
Attaching package: 'clmstan'
The following object is masked from 'package:base':
gamma
>
> test_check("clmstan")
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: All OK
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
All Rhat < 1.01 (max: 1.001)
All ESS > 100 (min bulk: 1900, min tail: 1729)
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 10 (WARNING!)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Max treedepth: 5 transitions hit limit
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: Low in chain(s) 1, 2 (WARNING!)
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
MCMC Diagnostics: Issues detected
========================================
HMC Diagnostics:
Divergences: 0 (OK)
Treedepth: OK
E-BFMI: OK
Convergence Diagnostics:
Max Rhat: 1.014 (WARNING!)
Min ESS bulk: 318 (WARNING!)
Min ESS tail: 320 (WARNING!)
Problematic parameters:
# A tibble: 4 x 4
variable rhat ess_bulk ess_tail
<chr> <dbl> <dbl> <dbl>
1 beta[2] 0.998 363 320
2 c_transformed[1] 1.01 387 369
3 c_transformed[3] 1.01 318 368
4 beta0 0.997 386 364
Saving _problems/test-loo-waic-263.R
Saving _problems/test-loo-waic-279.R
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-clm_stan.R:24:3', 'test-clm_stan.R:47:3',
'test-clm_stan.R:74:3', 'test-link-sampling.R:50:3',
'test-link-sampling.R:70:3', 'test-link-sampling.R:90:3',
'test-link-sampling.R:110:3', 'test-link-sampling.R:130:3',
'test-link-sampling.R:154:3', 'test-link-sampling.R:180:3',
'test-link-sampling.R:206:3', 'test-link-sampling.R:233:3',
'test-link-sampling.R:259:3', 'test-link-sampling.R:285:3',
'test-link-sampling.R:315:3', 'test-link-sampling.R:342:3',
'test-link-sampling.R:372:3', 'test-link-sampling.R:393:3'
• empty test (5): 'test-model-consistency.R:60:1',
'test-model-consistency.R:83:1', 'test-model-consistency.R:106:1',
'test-model-consistency.R:130:1', 'test-model-consistency.R:161:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-loo-waic.R:263:3'): loo results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-loo-waic.R:279:3'): waic results can be used with loo_compare ──
Expected `is.matrix(comparison)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 23 | PASS 841 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64