Last updated on 2026-10-23 01:56:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 18.75 | 277.82 | 296.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 14.74 | 193.25 | 207.99 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 14.00 | 140.29 | 154.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 13.00 | 139.19 | 152.19 | ERROR | |
| r-devel-windows-x86_64 | 2.0.3 | 25.00 | 263.00 | 288.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 19.43 | 258.44 | 277.87 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 17.80 | 258.62 | 276.42 | OK | |
| r-release-macos-arm64 | 2.0.3 | 5.00 | 68.00 | 73.00 | OK | |
| r-release-macos-x86_64 | 2.0.3 | 14.00 | 323.00 | 337.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 21.00 | 251.00 | 272.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 6.00 | 89.00 | 95.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.3 | 13.00 | 298.00 | 311.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 31.00 | 342.00 | 373.00 | OK |
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘easysurv-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_schoenfeld
> ### Title: Extract Schoenfeld Residuals
> ### Aliases: get_schoenfeld
>
> ### ** Examples
>
> library(survival)
> test_fit <- survival::coxph(survival::Surv(time, status) ~ sex, data = lung)
> test_fit_zph <- survival::cox.zph(test_fit)
Error in a$specials[[i]] : subscript out of bounds
Calls: <Anonymous> ... model.matrix -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [17s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(easysurv)
>
> test_check("easysurv")
! Failed splines: "1_knot_hazard_scale", "2_knot_hazard_scale", and "3_knot_hazard_scale".
! Failed splines: "1_knot_hazard_scale", "2_knot_hazard_scale", and "3_knot_hazard_scale".
Saving _problems/test-test_ph-9.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-test_ph.R:2:3'): test_ph function does not return an error ───
Expected `test_ph(data = easy_lung, time = "time", event = "status", group = "sex")` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘easysurv.Rmd’ using rmarkdown
Quitting from easysurv.Rmd:189-198 [ph]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─easysurv::test_ph(...)
2. └─survival::cox.zph(the_coxph)
3. └─survival:::coxph.getdata(...)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'easysurv.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘easysurv.Rmd’
SUMMARY: processing the following file failed:
‘easysurv.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [17s/34s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(easysurv)
>
> test_check("easysurv")
! Failed splines: "1_knot_hazard_scale", "2_knot_hazard_scale", and "3_knot_hazard_scale".
! Failed splines: "1_knot_hazard_scale", "2_knot_hazard_scale", and "3_knot_hazard_scale".
Saving _problems/test-test_ph-9.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-test_ph.R:2:3'): test_ph function does not return an error ───
Expected `test_ph(data = easy_lung, time = "time", event = "status", group = "sex")` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc