CRAN Package Check Results for Maintainer ‘George Vega Yon <g.vegayon at gmail.com>’

Last updated on 2026-03-27 02:51:39 CET.

Package ERROR NOTE OK
ABCoptim 14
aphylo 14
barry 14
defm 2 12
epiworldR 3 11
ergmito 2 12
fmcmc 2 12
googlePublicData 2 12
netdiffuseR 6 3 5
netplot 14
rgexf 2 12
slurmR 2 12

Package ABCoptim

Current CRAN status: OK: 14

Package aphylo

Current CRAN status: OK: 14

Package barry

Current CRAN status: OK: 14

Package defm

Current CRAN status: NOTE: 2, OK: 12

Version: 0.2.1.0
Check: installed package size
Result: NOTE installed size is 6.4Mb sub-directories of 1Mb or more: libs 6.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package epiworldR

Current CRAN status: NOTE: 3, OK: 11

Version: 0.13.0.0
Check: installed package size
Result: NOTE installed size is 20.7Mb sub-directories of 1Mb or more: doc 1.9Mb help 1.3Mb libs 16.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ergmito

Current CRAN status: NOTE: 2, OK: 12

Version: 0.3-2
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: libs 4.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package fmcmc

Current CRAN status: NOTE: 2, OK: 12

Version: 0.5-2
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (JOSS reviewer, <https://orcid.org/0000-0001-8172-3603>)’ Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-8172-3603>)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package googlePublicData

Current CRAN status: NOTE: 2, OK: 12

Version: 0.16.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘George Vega Yon <g.vegayon@gmail.com>’ Found the following (possibly) invalid file URI: URI: publicdata.google.com From: man/dspl.Rd Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package netdiffuseR

Current CRAN status: ERROR: 6, NOTE: 3, OK: 5

Version: 1.24.0
Check: examples
Result: ERROR Running examples in ‘netdiffuseR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: round_to_seq > ### Title: Takes a numeric vector and maps it into a finite length sequence > ### Aliases: round_to_seq > > ### ** Examples > > > x <- rnorm(100) > w <- data.frame(as.integer(round_to_seq(x, as_factor = TRUE)),x) > plot(w,x) Error in attr(x, "formula") %||% { : invalid formula Calls: plot ... plot.data.frame -> <Anonymous> -> formula -> formula.default -> %||% Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed diffusionMap 6.440 0.031 7.628 degree_adoption_diagnostic 5.201 0.051 6.049 rewire_graph 4.931 0.068 5.710 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.24.0
Check: examples
Result: ERROR Running examples in ‘netdiffuseR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: round_to_seq > ### Title: Takes a numeric vector and maps it into a finite length sequence > ### Aliases: round_to_seq > > ### ** Examples > > > x <- rnorm(100) > w <- data.frame(as.integer(round_to_seq(x, as_factor = TRUE)),x) > plot(w,x) Error in attr(x, "formula") %||% { : invalid formula Calls: plot ... plot.data.frame -> <Anonymous> -> formula -> formula.default -> %||% Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed degree_adoption_diagnostic 3.58 0.067 5.146 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.24.0
Check: examples
Result: ERROR Running examples in ‘netdiffuseR-Ex.R’ failed The error most likely occurred in: > ### Name: round_to_seq > ### Title: Takes a numeric vector and maps it into a finite length sequence > ### Aliases: round_to_seq > > ### ** Examples > > > x <- rnorm(100) > w <- data.frame(as.integer(round_to_seq(x, as_factor = TRUE)),x) > plot(w,x) Error in attr(x, "formula") %||% { : invalid formula Calls: plot ... plot.data.frame -> <Anonymous> -> formula -> formula.default -> %||% Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.24.0
Flags: --no-vignettes
Check: examples
Result: ERROR Running examples in 'netdiffuseR-Ex.R' failed The error most likely occurred in: > ### Name: round_to_seq > ### Title: Takes a numeric vector and maps it into a finite length sequence > ### Aliases: round_to_seq > > ### ** Examples > > > x <- rnorm(100) > w <- data.frame(as.integer(round_to_seq(x, as_factor = TRUE)),x) > plot(w,x) Error in attr(x, "formula") %||% { : invalid formula Calls: plot ... plot.data.frame -> <Anonymous> -> formula -> formula.default -> %||% Execution halted Flavor: r-devel-windows-x86_64

Version: 1.24.0
Check: examples
Result: ERROR Running examples in ‘netdiffuseR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: exposure > ### Title: Ego exposure > ### Aliases: exposure > ### Keywords: univar > > ### ** Examples > > # Calculating lagged exposure ----------------------------------------------- > > set.seed(8) > graph <- rdiffnet(20, 4) > > expo0 <- exposure(graph) > expo1 <- exposure(graph, lags = 1) > > # These should be equivalent > stopifnot(all(expo0[, -4] == expo1[, -1])) # No stop! > > > # Calculating the exposure based on Structural Equivalence ------------------ > set.seed(113132) > graph <- rdiffnet(100, 4) > > SE <- lapply(struct_equiv(graph), "[[", "SE") > SE <- lapply(SE, function(x) { + x <- 1/x + x[!is.finite(x)] <- 0 + x + }) > > > # These three lines are equivalent to: > expo_se2 <- exposure(graph, alt.graph="se", valued=TRUE) > # Notice that we are setting valued=TRUE, but this is not necesary since when > # alt.graph = "se" the function checks this to be setted equal to TRUE > > # Weighted Exposure using degree -------------------------------------------- > eDE <- exposure(graph, attrs=dgr(graph)) > > # Which is equivalent to > graph[["deg"]] <- dgr(graph) > eDE2 <- exposure(graph, attrs="deg") > > # Comparing using incoming edges ------------------------------------------- > eIN <- exposure(graph, outgoing=FALSE) > > # Structral equivalence for different communities --------------------------- > data(medInnovationsDiffNet) > > # Only using 4 time slides, this is for convenience > medInnovationsDiffNet <- medInnovationsDiffNet[, , 1:4] > > # METHOD 1: Using the c.diffnet method: > > # Creating subsets by city > cities <- unique(medInnovationsDiffNet[["city"]]) > > diffnet <- medInnovationsDiffNet[medInnovationsDiffNet[["city"]] == cities[1]] > diffnet[["expo_se"]] <- exposure(diffnet, alt.graph="se", valued=TRUE) *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: ..subscript.2ary(x, l[[1L]], l[[2L]], drop = drop[1L]) 2: .subscript.2ary(x, i, , drop = TRUE) 3: d[ids[, 1], ] 4: d[ids[, 1], ] 5: euclidean_distance(gdist) 6: struct_equiv_new(geod, v) 7: struct_equiv.dgCMatrix(methods::as(graph[[i]], "dgCMatrix"), v, inf.replace, groupvar, ...) 8: struct_equiv.list(graph, v, inf.replace, groupvar, ...) 9: struct_equiv(graph, groupvar = groupvar, ...) 10: lapply(struct_equiv(graph, groupvar = groupvar, ...), "[[", "SE") 11: exposure(diffnet, alt.graph = "se", valued = TRUE) An irrecoverable exception occurred. R is aborting now ... Segmentation fault Examples with CPU (user + system) or elapsed time > 5s user system elapsed diffusionMap 6.194 0.055 7.049 degree_adoption_diagnostic 4.840 0.071 5.583 Flavor: r-patched-linux-x86_64

Version: 1.24.0
Check: installed package size
Result: NOTE installed size is 10.8Mb sub-directories of 1Mb or more: doc 2.4Mb help 1.3Mb libs 5.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.24.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE installed size is 6.5Mb sub-directories of 1Mb or more: doc 2.4Mb help 1.3Mb libs 1.5Mb Flavor: r-oldrel-windows-x86_64

Package netplot

Current CRAN status: OK: 14

Package rgexf

Current CRAN status: NOTE: 2, OK: 12

Version: 0.16.3
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (JOSS reviewer), Jonathan Cardoso Silva [rev] (JOSS reviewer)’ Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (what: JOSS reviewer), Jonathan Cardoso Silva [rev] (what: JOSS reviewer)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package slurmR

Current CRAN status: NOTE: 2, OK: 12

Version: 0.5-4
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (JOSS reviewer, <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (JOSS reviewer, <https://orcid.org/0000-0001-9754-0393>)’ Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-9754-0393>)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc