Last updated on 2026-01-20 02:51:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.32 | 807.95 | 845.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.30 | 528.50 | 551.80 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 63.00 | 1301.41 | 1364.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 59.00 | 1153.46 | 1212.46 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 585.00 | 622.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.91 | 731.70 | 782.61 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 32.24 | 740.46 | 772.70 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 542.00 | 579.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | ERROR | ||||
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 727.00 | 752.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 51.00 | 671.00 | 722.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [107s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-20 14:04:07.374704: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.374942: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.377921: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.383998: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.408384: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.408536: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.410773: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.416906: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.423848: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.428656: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.444506: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.444945: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.451163: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.451304: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.455733: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.470394: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.470749: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.489778: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.48989: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.493811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.527103: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.536496: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.536795: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.549637: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.62643: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.627838: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.662648: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.662786: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.664992: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.670941: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.678661: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.678886: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.683505: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.698136: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.698532: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.737248: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.737384: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.73929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.745292: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.756977: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.757154: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.761584: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.776237: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.776582: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.794456: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.794589: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.797008: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.803072: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.815804: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.816019: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.821494: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.836528: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.836964: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.85472: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.854842: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.863452: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.869817: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.883874: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.884059: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.889288: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.905144: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.905585: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.924483: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.92464: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.927142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.933259: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:07.944485: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.944658: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.948959: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:07.963597: embedding
> test_pipeop_isomap.R: 2026-01-20 14:04:07.964015: DONE
> test_pipeop_isomap.R: 2026-01-20 14:04:07.985934: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:07.986092: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:07.995918: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:08.002526: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:08.022528: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:08.022649: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:08.024797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:08.030661: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 14:04:08.035956: Isomap START
> test_pipeop_isomap.R: 2026-01-20 14:04:08.036078: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 14:04:08.038305: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 14:04:08.044429: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [321s/433s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-19 19:21:56.518564: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:21:56.51927: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:56.556301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:56.594521: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:21:56.693128: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:21:56.693774: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:56.720767: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:56.757328: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:21:56.816166: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:21:56.816621: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:56.852764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:56.960667: embedding
> test_pipeop_isomap.R: 2026-01-19 19:21:56.961839: DONE
> test_pipeop_isomap.R: 2026-01-19 19:21:57.01309: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:21:57.013402: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:57.0918: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:57.193694: embedding
> test_pipeop_isomap.R: 2026-01-19 19:21:57.194911: DONE
> test_pipeop_isomap.R: 2026-01-19 19:21:57.368244: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:21:57.368546: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:57.407521: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:57.665249: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:21:57.749019: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:21:57.749464: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:57.813984: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:58.406639: embedding
> test_pipeop_isomap.R: 2026-01-19 19:21:58.410549: DONE
> test_pipeop_isomap.R: 2026-01-19 19:21:58.730042: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:21:58.744569: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:58.751975: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:58.799848: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:21:58.855827: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:21:58.856264: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:58.901623: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:59.015131: embedding
> test_pipeop_isomap.R: 2026-01-19 19:21:59.016765: DONE
> test_pipeop_isomap.R: 2026-01-19 19:21:59.301349: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:21:59.31503: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:59.321942: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:59.368267: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:21:59.450142: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:21:59.450579: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:59.502211: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:59.602382: embedding
> test_pipeop_isomap.R: 2026-01-19 19:21:59.603532: DONE
> test_pipeop_isomap.R: 2026-01-19 19:21:59.811998: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:21:59.812306: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:21:59.833523: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:21:59.890039: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:21:59.994118: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:21:59.996339: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:00.035971: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:00.15021: embedding
> test_pipeop_isomap.R: 2026-01-19 19:22:00.151427: DONE
> test_pipeop_isomap.R: 2026-01-19 19:22:00.331853: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:22:00.332167: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:00.338962: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:00.385913: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:22:00.488139: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:22:00.488624: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:00.519037: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:00.632714: embedding
> test_pipeop_isomap.R: 2026-01-19 19:22:00.633867: DONE
> test_pipeop_isomap.R: 2026-01-19 19:22:00.854341: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:22:00.854674: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:00.861503: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:00.938838: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:22:01.030159: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 19:22:01.030615: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:01.0725: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:01.184176: embedding
> test_pipeop_isomap.R: 2026-01-19 19:22:01.185402: DONE
> test_pipeop_isomap.R: 2026-01-19 19:22:01.355444: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:22:01.35586: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:01.383999: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:01.440381: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:22:01.593648: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:22:01.593972: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:01.624162: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:01.659648: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 19:22:01.707831: Isomap START
> test_pipeop_isomap.R: 2026-01-19 19:22:01.708145: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 19:22:01.743937: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 19:22:01.787001: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [290s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 16:16:45.815526: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.816596: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.830182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.85286: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924012: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924484: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.932784: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.954529: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.98782: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.988521: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.012046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.061949: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.063834: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.115601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.116369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.141883: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.192334: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.194562: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.309377: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.31006: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.334583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.447183: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:46.491673: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.492318: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.534133: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.734709: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.739824: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956391: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956832: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.963703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.979221: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01364: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01425: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.029205: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.065929: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.06718: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.259106: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.25977: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.270811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.293168: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.3869: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.38753: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.402279: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.437225: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.43836: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.541812: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.542424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.554538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.577187: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.654275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.655185: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.679313: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.729601: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.731512: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830133: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830653: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.841836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.86317: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.935614: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.936472: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.958377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.998494: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.000015: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.124603: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.125084: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.134392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.149473: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.212644: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.213604: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.23658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.285648: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.287417: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.423782: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.424429: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.436787: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.458976: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.576937: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.577575: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.588312: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.60597: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.644312: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.645016: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.656383: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.679226: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64