Last updated on 2024-04-30 01:50:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.1 | 11.42 | 313.51 | 324.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.3.1 | 9.08 | 231.40 | 240.48 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.4.0 | 402.00 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.4.0 | 410.20 | OK | |||
| r-devel-windows-x86_64 | 2.3.1 | 12.00 | 256.00 | 268.00 | OK | |
| r-patched-linux-x86_64 | 2.3.1 | 13.34 | 297.10 | 310.44 | OK | |
| r-release-linux-x86_64 | 2.3.1 | 8.13 | 304.27 | 312.40 | OK | |
| r-release-macos-arm64 | 2.4.0 | 5.00 | ERROR | |||
| r-release-macos-x86_64 | 2.4.0 | 8.00 | ERROR | |||
| r-release-windows-x86_64 | 2.3.1 | 12.00 | 258.00 | 270.00 | OK | |
| r-oldrel-macos-arm64 | 2.4.0 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.4.0 | 7.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.3.1 | 15.00 | 325.00 | 340.00 | ERROR |
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat-active_snw.R’ [24s/38s]
Running ‘testthat-clustering.R’ [5s/9s]
Running ‘testthat-comparison.R’ [3s/5s]
Running ‘testthat-core.R’ [2s/4s]
Running ‘testthat-data_generation.R’ [3s/5s]
Running ‘testthat-enrichment.R’ [25s/39s]
Running ‘testthat-scoring.R’ [3s/6s]
Running ‘testthat-utility.R’ [17s/25s]
Running ‘testthat-visualization.R’ [4s/5s]
Running ‘testthat-zzz.R’ [2s/4s]
Running the tests in ‘tests/testthat-enrichment.R’ failed.
Complete output:
> library(testthat)
> library(pathfindR)
Loading required package: pathfindR.data
##############################################################################
Welcome to pathfindR!
Please cite the article below if you use pathfindR in published reseach:
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
Front. Genet. doi:10.3389/fgene.2019.00858
##############################################################################
>
> test_check("pathfindR", filter = "enrichment")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-enrichment.R:123:5'): `enrichment_analyses()` -- returns a data frame ──
enr_res1 <- ... inherits from `'NULL'` not `'character'`.
── Failure ('test-enrichment.R:127:5'): `enrichment_analyses()` -- returns a data frame ──
nrow(enr_res1) <= total is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-enrichment.R:130:5'): `enrichment_analyses()` -- returns a data frame ──
enr_res2 <- ... inherits from `'NULL'` not `'character'`.
── Failure ('test-enrichment.R:132:5'): `enrichment_analyses()` -- returns a data frame ──
ncol(enr_res2) == ncol(enr_res1) + 1 is not TRUE
`actual`:
`expected`: TRUE
── Error ('test-enrichment.R:143:9'): `summarize_enrichment_results()` -- returns summarized enrichment results ──
Error in `summarize_enrichment_results(enrichment_res = combined_res[,
-6])`: `enrichment_res` should be a data frame
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-enrichment.R:143:9
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─pathfindR::summarize_enrichment_results(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.4.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggkegg’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.1
Check: tests
Result: ERROR
Running 'testthat-active_snw.R' [32s]
Running 'testthat-clustering.R' [6s]
Running 'testthat-comparison.R' [4s]
Running 'testthat-core.R' [4s]
Running 'testthat-data_generation.R' [4s]
Running 'testthat-enrichment.R' [38s]
Running 'testthat-scoring.R' [4s]
Running 'testthat-utility.R' [19s]
Running 'testthat-visualization.R' [6s]
Running 'testthat-zzz.R' [4s]
Running the tests in 'tests/testthat-enrichment.R' failed.
Complete output:
> library(testthat)
> library(pathfindR)
Loading required package: pathfindR.data
##############################################################################
Welcome to pathfindR!
Please cite the article below if you use pathfindR in published reseach:
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
Front. Genet. doi:10.3389/fgene.2019.00858
##############################################################################
>
> test_check("pathfindR", filter = "enrichment")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-enrichment.R:123:5'): `enrichment_analyses()` -- returns a data frame ──
enr_res1 <- ... inherits from `'NULL'` not `'character'`.
── Failure ('test-enrichment.R:127:5'): `enrichment_analyses()` -- returns a data frame ──
nrow(enr_res1) <= total is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-enrichment.R:130:5'): `enrichment_analyses()` -- returns a data frame ──
enr_res2 <- ... inherits from `'NULL'` not `'character'`.
── Failure ('test-enrichment.R:132:5'): `enrichment_analyses()` -- returns a data frame ──
ncol(enr_res2) == ncol(enr_res1) + 1 is not TRUE
`actual`:
`expected`: TRUE
── Error ('test-enrichment.R:143:9'): `summarize_enrichment_results()` -- returns summarized enrichment results ──
Error in `summarize_enrichment_results(enrichment_res = combined_res[,
-6])`: `enrichment_res` should be a data frame
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-enrichment.R:143:9
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─pathfindR::summarize_enrichment_results(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64