Last updated on 2025-07-29 01:49:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 54.71 | 153.69 | 208.40 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 40.85 | 66.97 | 107.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 228.30 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 226.02 | OK | |||
| r-devel-windows-x86_64 | 0.2.1 | 54.00 | 211.00 | 265.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 54.40 | 152.84 | 207.24 | NOTE | |
| r-release-linux-x86_64 | 0.2.1 | 56.02 | 163.74 | 219.76 | ERROR | |
| r-release-macos-arm64 | 0.2.2 | 63.00 | OK | |||
| r-release-macos-x86_64 | 0.2.2 | 106.00 | OK | |||
| r-release-windows-x86_64 | 0.2.2 | 55.00 | 130.00 | 185.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.2 | 72.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.2 | 105.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.2.2 | 52.00 | 138.00 | 190.00 | OK |
Version: 0.2.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘plotting.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mouse.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz'
Content type 'text/html' length 13683 bytes (13 KB)
==================================================
downloaded 13 KB
Quitting from mouse.Rmd:38-77 [load-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─GEOquery::getGEO("GSE60361")
2. └─GEOquery:::getAndParseGSEMatrices(...)
3. └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
4. ├─xml2::read_html(url)
5. └─xml2:::read_html.default(url)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
9. └─xml2:::read_xml.character(...)
10. └─xml2:::read_xml.connection(...)
11. ├─base::open(x, "rb")
12. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mouse.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mouse.Rmd’
--- re-building ‘pbmc.Rmd’ using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB)
==================================================
downloaded 37.0 MB
|
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|
|========= | 12%
|
|================== | 25%
|
|========================== | 38%
|
|=================================== | 50%
|
|============================================ | 62%
|
|==================================================== | 75%
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|============================================================= | 88%
|
|======================================================================| 100%
trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
Content type 'application/octet-stream' length 15045381 bytes (14.3 MB)
==================================================
downloaded 14.3 MB
--- finished re-building ‘pbmc.Rmd’
SUMMARY: processing the following file failed:
‘mouse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 20.7Mb
sub-directories of 1Mb or more:
libs 20.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64