CRAN Package Check Results for Maintainer ‘Selcuk Korkmaz <selcukorkmaz at gmail.com>’

Last updated on 2025-08-23 01:50:08 CEST.

Package ERROR OK
fastml 13
genSEIR 13
MVN 13
PubChemR 1 12
rPDBapi 1 12

Package fastml

Current CRAN status: OK: 13

Package genSEIR

Current CRAN status: OK: 13

Package MVN

Current CRAN status: OK: 13

Package PubChemR

Current CRAN status: ERROR: 1, OK: 12

Version: 2.1.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’ using rmarkdown Quitting from Enhancing_Chemical_Data_Access_with_PubChemR.Rmd:253-255 [unnamed-chunk-26] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'sectionList' applied to an object of class "NULL" --- Backtrace: ▆ 1. ├─PubChemR::sectionList(object = result) 2. └─PubChemR:::sectionList.PugViewInstance(object = result) 3. ├─base::do.call("sectionList", call_args) 4. └─PubChemR::sectionList(object = NULL) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Enhancing_Chemical_Data_Access_with_PubChemR.Rmd' failed with diagnostics: no applicable method for 'sectionList' applied to an object of class "NULL" --- failed re-building ‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’ --- re-building ‘Exploring_Chemical_Data_with_PubChemR.Rmd’ using rmarkdown --- finished re-building ‘Exploring_Chemical_Data_with_PubChemR.Rmd’ --- re-building ‘Working_with_PubChemR_to_Access_Chemical_Data.Rmd’ using rmarkdown --- finished re-building ‘Working_with_PubChemR_to_Access_Chemical_Data.Rmd’ SUMMARY: processing the following file failed: ‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package rPDBapi

Current CRAN status: ERROR: 1, OK: 12

Version: 2.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [23s/179s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rPDBapi) > > test_check("rPDBapi") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_get_pdb_file.R:3:3'): get_pdb_file downloads and parses the PDB file correctly ── Error in `value[[3L]](cond)`: API Error: Failed to retrieve data for PDB ID '4HHB'. Error: HTTP Error: Request to https://files.rcsb.org/download/4HHB.pdb.gz failed with status: - Server error: (503) Service Unavailable Backtrace: ▆ 1. └─rPDBapi::get_pdb_file("4HHB", filetype = "pdb", save = FALSE) at test_get_pdb_file.R:3:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc