Last updated on 2025-08-23 01:50:08 CEST.
Package | ERROR | OK |
---|---|---|
fastml | 13 | |
genSEIR | 13 | |
MVN | 13 | |
PubChemR | 1 | 12 |
rPDBapi | 1 | 12 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 2.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’ using rmarkdown
Quitting from Enhancing_Chemical_Data_Access_with_PubChemR.Rmd:253-255 [unnamed-chunk-26]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'sectionList' applied to an object of class "NULL"
---
Backtrace:
▆
1. ├─PubChemR::sectionList(object = result)
2. └─PubChemR:::sectionList.PugViewInstance(object = result)
3. ├─base::do.call("sectionList", call_args)
4. └─PubChemR::sectionList(object = NULL)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Enhancing_Chemical_Data_Access_with_PubChemR.Rmd' failed with diagnostics:
no applicable method for 'sectionList' applied to an object of class "NULL"
--- failed re-building ‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’
--- re-building ‘Exploring_Chemical_Data_with_PubChemR.Rmd’ using rmarkdown
--- finished re-building ‘Exploring_Chemical_Data_with_PubChemR.Rmd’
--- re-building ‘Working_with_PubChemR_to_Access_Chemical_Data.Rmd’ using rmarkdown
--- finished re-building ‘Working_with_PubChemR_to_Access_Chemical_Data.Rmd’
SUMMARY: processing the following file failed:
‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 2.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/179s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rPDBapi)
>
> test_check("rPDBapi")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_get_pdb_file.R:3:3'): get_pdb_file downloads and parses the PDB file correctly ──
Error in `value[[3L]](cond)`: API Error: Failed to retrieve data for PDB ID '4HHB'. Error: HTTP Error: Request to https://files.rcsb.org/download/4HHB.pdb.gz failed with status: - Server error: (503) Service Unavailable
Backtrace:
▆
1. └─rPDBapi::get_pdb_file("4HHB", filetype = "pdb", save = FALSE) at test_get_pdb_file.R:3:3
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc