CRAN Package Check Results for Maintainer Thijs Janzen <thijsjanzen at gmail.com>

CRAN Package Check Results for Maintainer ‘Thijs Janzen <thijsjanzen at gmail.com>’

Last updated on 2025-11-15 02:53:45 CET.

Package	ERROR	NOTE	OK
GenomeAdmixR		2	11
GUILDS			13
junctions			13
nLTT			13
nodeSub			13
simRestore	1		12
STEPCAM			13
treestats	2	2	9

Additional issues

musl

Version: 2.1.12
Check: installed package size
Result: NOTE installed size is 6.9Mb sub-directories of 1Mb or more: doc 2.0Mb libs 4.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package GUILDS

Current CRAN status: OK: 13

Package nLTT

Current CRAN status: OK: 13

Package nodeSub

Current CRAN status: OK: 13

Version: 1.1.5
Check: tests
Result: ERROR Running 'testthat.R' [6s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(simRestore) > > test_check("simRestore") [ FAIL 2 | WARN 0 | SKIP 0 | PASS 79 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-optimize_static.R:21:3'): simple optimization ──────────────── vx$final_freq is not strictly less than 0.999. Difference: NaN ── Failure ('test-optimize_static.R:22:3'): simple optimization ──────────────── length(vx$results$t) not equal to 5. 1/1 mismatches [1] 4 - 5 == -1 [ FAIL 2 | WARN 0 | SKIP 0 | PASS 79 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Package STEPCAM

Current CRAN status: OK: 13

Package treestats

Current CRAN status: ERROR: 2, NOTE: 2, OK: 9

Version: 1.70.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Example_abc.Rmd’ using rmarkdown Quitting from Example_abc.Rmd:12-23 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'abcrf' --- Backtrace: ▆ 1. └─base::library(abcrf) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Example_abc.Rmd' failed with diagnostics: there is no package called 'abcrf' --- failed re-building ‘Example_abc.Rmd’ --- re-building ‘Example_data.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Example_data.Rmd’ --- re-building ‘Getting_started.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Getting_started.Rmd’ --- re-building ‘Speed_improvement.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Speed_improvement.Rmd’ SUMMARY: processing the following file failed: ‘Example_abc.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.70.8
Check: installed package size
Result: NOTE installed size is 8.7Mb sub-directories of 1Mb or more: doc 2.8Mb libs 5.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64