A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.
| Version: |
1.0.1 |
| Imports: |
bigtabulate, bsicons, bslib, callr, checkmate, data.table, dplyr, DT, fs, ggplot2, ggrepel, grDevices, heatmaply, Hmisc, htmltools, magrittr, matrixStats, memuse, methods, paletteer, parallel, pheatmap, plotly, R.devices, readr, reshape2, rintrojs, seqinr, shiny, shinycssloaders, shinyFiles, shinyjs, shinyWidgets, spsComps, stats, tibble, tidyr, tools, upsetjs, UpSetR, utils |
| Suggests: |
BiocGenerics, BiocManager, Biostrings, edgeR, harrypotter, HTSFilter, limma, oompaBase, palr, Rfastp, Rsamtools, Rsubread, rtracklayer, S4Vectors, ShortRead, testthat (≥ 3.0.0), XVector |
| Published: |
2025-09-13 |
| DOI: |
10.32614/CRAN.package.inDAGO |
| Author: |
Carmine Fruggiero [aut, cre],
Gaetano Aufiero [aut] |
| Maintainer: |
Carmine Fruggiero <fruggierocarmine3 at gmail.com> |
| BugReports: |
https://github.com/inDAGOverse/inDAGO/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/inDAGOverse/inDAGO |
| NeedsCompilation: |
no |
| CRAN checks: |
inDAGO results |