linelistBayes: Bayesian Analysis of Epidemic Data Using Line List and Case
Count Approaches
Provides tools for performing Bayesian inference on epidemiological
data to estimate the time-varying reproductive number and other related metrics.
These methods were published in Li and White (2021) <doi:10.1371/journal.pcbi.1009210>.
This package supports analyses based on aggregated case count data and individual line list
data, facilitating enhanced surveillance and intervention planning for infectious
diseases like COVID-19.
| Version: |
1.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
Rcpp (≥ 1.0.11), magrittr, lubridate, coda, dplyr |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2024-05-03 |
| DOI: |
10.32614/CRAN.package.linelistBayes |
| Author: |
Chad Milando [aut, cre],
Tenglong Li [ctb],
Laura White [ctb] |
| Maintainer: |
Chad Milando <cmilando at bu.edu> |
| License: |
GPL-3 |
| NeedsCompilation: |
yes |
| Materials: |
README |
| In views: |
Epidemiology |
| CRAN checks: |
linelistBayes results |
Documentation:
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