FishPhyloMaker: Phylogenies for a List of Finned-Ray Fishes

Provides an alternative to facilitate the construction of a phylogeny for fish species from a list of species or a community matrix using as a backbone the phylogenetic tree proposed by Rabosky et al. (2018) <doi:10.1038/s41586-018-0273-1>.

Version: 0.2.0
Depends: R (≥ 2.10)
Imports: ape, fishtree, geiger, knitr, phytools, progress, rfishbase, rmarkdown, utils
Suggests: markdown, gh
Published: 2021-09-15
DOI: 10.32614/CRAN.package.FishPhyloMaker
Author: Gabriel Nakamura ORCID iD [aut, cre], Aline Richter [aut], Bruno Soares [aut]
Maintainer: Gabriel Nakamura <gabriel.nakamura.souza at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: FishPhyloMaker results

Documentation:

Reference manual: FishPhyloMaker.html , FishPhyloMaker.pdf
Vignettes: Using FishPhyloMaker to build phylogenies for finned-ray fishes (source, R code)
How to map species insertions in phylogenetic tree? (source, R code)
How to find for species that must be added? (source, R code)

Downloads:

Package source: FishPhyloMaker_0.2.0.tar.gz
Windows binaries: r-devel: FishPhyloMaker_0.2.0.zip, r-release: FishPhyloMaker_0.2.0.zip, r-oldrel: FishPhyloMaker_0.2.0.zip
macOS binaries: r-release (arm64): FishPhyloMaker_0.2.0.tgz, r-oldrel (arm64): FishPhyloMaker_0.2.0.tgz, r-release (x86_64): FishPhyloMaker_0.2.0.tgz, r-oldrel (x86_64): FishPhyloMaker_0.2.0.tgz

Linking:

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