Last updated on 2025-11-01 01:51:16 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/130s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.568, system: 0.049, elapsed: 2.275 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.555, system: 0.157, elapsed: 12.705 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.017, elapsed: 0.288 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.944, system: 0.221, elapsed: 4.974 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.009, elapsed: 0.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.010, system: 0.481, elapsed: 21.320 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.704, system: 0.076, elapsed: 2.199 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.636, system: 0.245, elapsed: 14.664 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.016, elapsed: 0.321 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.070, system: 0.253, elapsed: 6.283 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.010, elapsed: 0.326 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.337, system: 0.627, elapsed: 24.605 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.792, system: 0.067, elapsed: 2.773 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.636, system: 0.256, elapsed: 14.573 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.015, elapsed: 0.276 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.036, system: 0.275, elapsed: 7.061 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.006, elapsed: 0.474 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.245, system: 0.243, elapsed: 1.976 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.725, system: 0.894, elapsed: 28.322 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.529, system: 0.044, elapsed: 3.466 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.810, system: 0.402, elapsed: 15.239 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.023, elapsed: 0.438 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.271, system: 0.361, elapsed: 8.323 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.003, elapsed: 0.288 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.907, system: 0.593, elapsed: 19.018 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.568, system: 1.473, elapsed: 48.119 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.047, elapsed: 1.788 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.644, system: 0.227, elapsed: 14.898 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.015, elapsed: 0.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.826, system: 0.271, elapsed: 5.570 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.008, elapsed: 0.206 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.963, system: 0.595, elapsed: 23.496 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.791, system: 0.087, elapsed: 2.365 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.702, system: 0.287, elapsed: 13.836 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.013, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.999, system: 0.279, elapsed: 5.855 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.016, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.401, system: 0.726, elapsed: 23.300 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.855, system: 0.085, elapsed: 2.554 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.778, system: 0.417, elapsed: 13.535 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.014, elapsed: 0.207 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.667, system: 0.233, elapsed: 4.220 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.019, elapsed: 0.209 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.117, system: 0.280, elapsed: 0.964 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.417, system: 1.087, elapsed: 22.482 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.700, system: 0.076, elapsed: 2.113 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.334, system: 0.130, elapsed: 13.002 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.010, elapsed: 0.198 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.618, system: 0.175, elapsed: 4.055 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.004, elapsed: 0.180 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.631, system: 0.492, elapsed: 21.766 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.258, system: 0.921, elapsed: 42.034 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64