Last updated on 2025-10-16 01:50:58 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.501, system: 0.041, elapsed: 2.323 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.083, system: 0.203, elapsed: 13.437 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.022, elapsed: 0.422 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.019, system: 0.325, elapsed: 7.458 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.010, elapsed: 0.258 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.535, system: 0.632, elapsed: 24.905 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.618, system: 0.082, elapsed: 2.238 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.166, system: 0.225, elapsed: 14.642 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.014, elapsed: 0.365 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.793, system: 0.160, elapsed: 7.085 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.296 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.474, system: 0.510, elapsed: 25.539 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.516, system: 0.029, elapsed: 2.662 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.975, system: 0.072, elapsed: 15.380 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.010, elapsed: 0.269 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.669, system: 0.171, elapsed: 6.084 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.003, elapsed: 0.251 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.133, system: 0.205, elapsed: 1.146 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.263, system: 0.511, elapsed: 26.792 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.437, system: 0.027, elapsed: 2.351 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.020, system: 0.076, elapsed: 14.389 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.270 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.751, system: 0.185, elapsed: 6.350 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.328 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.169, system: 0.443, elapsed: 18.034 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.367, system: 0.771, elapsed: 42.769 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/118s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.500, system: 0.037, elapsed: 2.629 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.038, system: 0.073, elapsed: 15.538 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.015, elapsed: 0.292 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.714, system: 0.196, elapsed: 5.763 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.005, elapsed: 0.258 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.162, system: 0.348, elapsed: 25.353 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.511, system: 0.031, elapsed: 2.552 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.117, system: 0.091, elapsed: 14.067 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.292 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.684, system: 0.167, elapsed: 5.945 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.006, elapsed: 0.327 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.213, system: 0.345, elapsed: 24.091 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.527, system: 0.032, elapsed: 2.944 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.100, system: 0.120, elapsed: 13.687 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.011, elapsed: 0.253 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.616, system: 0.218, elapsed: 5.672 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.012, elapsed: 0.278 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.030, system: 0.236, elapsed: 0.823 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.231, system: 0.657, elapsed: 24.595 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.562, system: 0.060, elapsed: 2.197 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.172, system: 0.184, elapsed: 12.661 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.233 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.543, system: 0.155, elapsed: 4.139 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.221 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.127, system: 0.453, elapsed: 15.920 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.400, system: 0.899, elapsed: 36.335 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64