mixtree: A Statistical Framework for Comparing Sets of Trees
Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.
| Version: | 0.0.1 |
| Imports: | igraph, treespace, vegan |
| Suggests: | knitr, rmarkdown |
| Published: | 2025-03-05 |
| DOI: | 10.32614/CRAN.package.mixtree |
| Author: | Cyril Geismar 
[aut, cre, cph] |
| Maintainer: | Cyril Geismar <c.geismar21 at imperial.ac.uk> |
| License: | MIT + file LICENSE |
| URL: | https://cygei.github.io/mixtree/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | mixtree results |
Documentation:
| Reference manual: | mixtree.pdf |
| Vignettes: |
mixtree (source, R code) |
Downloads:
| Package source: | mixtree_0.0.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-devel (arm64): mixtree_0.0.1.tgz, r-release (arm64): mixtree_0.0.1.tgz, r-oldrel (arm64): mixtree_0.0.1.tgz, r-devel (x86_64): mixtree_0.0.1.tgz, r-release (x86_64): mixtree_0.0.1.tgz, r-oldrel (x86_64): mixtree_0.0.1.tgz |
Linking:
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