Provides a simple interface for extracting various elements from the publicly available PubMed XML files, incorporating PubMed's regular updates, and combining the data with the NIH Open Citation Collection. See Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
| Version: | 1.0.21 |
| Depends: | R (≥ 3.6) |
| Imports: | curl (≥ 4.3.2), data.table (≥ 1.12.2), DBI (≥ 1.1.0), foreach (≥ 1.5.0), glue (≥ 1.4.2), iterators (≥ 1.0.12), jsonlite (≥ 1.7.0), R.utils (≥ 2.10.1), RCurl (≥ 1.98), withr (≥ 2.3.0), xml2 (≥ 1.3.3) |
| Suggests: | bigrquery (≥ 1.3.2), doParallel (≥ 1.0.16), RMariaDB (≥ 1.0.9), RPostgres (≥ 1.2.0), RSQLite (≥ 2.2.0), testthat (≥ 2.3.2), knitr, rmarkdown |
| Published: | 2025-01-14 |
| DOI: | 10.32614/CRAN.package.pmparser |
| Author: | Jake Hughey [aut, cre], Josh Schoenbachler [aut], Elliot Outland [aut] |
| Maintainer: | Jake Hughey <jakejhughey at gmail.com> |
| License: | GPL-2 |
| URL: | https://pmparser.hugheylab.org, https://github.com/hugheylab/pmparser |
| NeedsCompilation: | no |
| SystemRequirements: | head, unzip, sqlite |
| Materials: | NEWS |
| CRAN checks: | pmparser results |
| Reference manual: | pmparser.pdf |
| Vignettes: |
Data Dictionary (source, R code) |
| Package source: | pmparser_1.0.21.tar.gz |
| Windows binaries: | r-devel: pmparser_1.0.21.zip, r-release: pmparser_1.0.21.zip, r-oldrel: pmparser_1.0.21.zip |
| macOS binaries: | r-devel (arm64): pmparser_1.0.21.tgz, r-release (arm64): pmparser_1.0.21.tgz, r-oldrel (arm64): pmparser_1.0.21.tgz, r-devel (x86_64): pmparser_1.0.21.tgz, r-release (x86_64): pmparser_1.0.21.tgz, r-oldrel (x86_64): pmparser_1.0.21.tgz |
| Old sources: | pmparser archive |
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