ripserr: Calculate Persistent Homology with Ripser-Based Engines

Ports the Ripser <doi:10.48550/arXiv.1908.02518> and Cubical Ripser <doi:10.48550/arXiv.2005.12692> persistent homology calculation engines from C++. Can be used as a rapid calculation tool in topological data analysis pipelines.

Version: 0.3.0
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 1.0), stats (≥ 3.0), utils (≥ 3.0)
LinkingTo: Rcpp
Suggests: covr (≥ 3.5), knitr (≥ 1.29), rmarkdown (≥ 2.3), testthat (≥ 2.3), lmtest
Published: 2025-04-06
DOI: 10.32614/CRAN.package.ripserr
Author: Raoul Wadhwa ORCID iD [aut], Matt Piekenbrock [aut], Jacob Scott ORCID iD [aut], Jason Cory Brunson ORCID iD [aut, cre], Emily Noble [ctb], Takeki Sudo [cph, ctb] (Takeki Sudo is a copyright holder for Cubical Ripser (GPL-3 license), which was refactored prior to inclusion in ripserr.), Kazushi Ahara [cph, ctb] (Kazushi Ahara is a copyright holder for Cubical Ripser (GPL-3 license), which was refactored prior to inclusion in ripserr.), Ulrich Bauer [cph, ctb] (Ulrich Bauer holds the copyright to Ripser (MIT license), which was refactored prior to inclusion in ripserr.), Xinyi Zhang [aut]
Maintainer: Jason Cory Brunson <cornelioid at gmail.com>
BugReports: https://github.com/tdaverse/ripserr/issues
License: GPL-3
URL: https://github.com/tdaverse/ripserr/
NeedsCompilation: yes
Materials: NEWS
CRAN checks: ripserr results

Documentation:

Reference manual: ripserr.pdf
Vignettes: Calculating Persistent Homology with a Cubical Complex (source, R code)
Modeling Cases of Mosquito-Borne Disease Using Persistent Homology (source, R code)
Calculating Persistent Homology with a Vietoris-Rips Complex (source, R code)

Downloads:

Package source: ripserr_0.3.0.tar.gz
Windows binaries: r-devel: ripserr_0.1.1.zip, r-release: ripserr_0.1.1.zip, r-oldrel: ripserr_0.1.1.zip
macOS binaries: r-devel (arm64): ripserr_0.3.0.tgz, r-release (arm64): ripserr_0.3.0.tgz, r-oldrel (arm64): ripserr_0.3.0.tgz, r-devel (x86_64): ripserr_0.3.0.tgz, r-release (x86_64): ripserr_0.3.0.tgz, r-oldrel (x86_64): ripserr_0.3.0.tgz
Old sources: ripserr archive

Linking:

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