Last updated on 2026-02-01 02:50:44 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/593s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.068, system: 0.156, elapsed: 6.664 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.051, system: 0.137, elapsed: 26.432 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.019, elapsed: 1.128 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.204, system: 0.921, elapsed: 181.319 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.003, elapsed: 0.413 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.342, system: 1.274, elapsed: 217.120 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.527, system: 0.033, elapsed: 3.898 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.069, system: 0.053, elapsed: 25.129 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.016, elapsed: 1.187 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.136, system: 0.912, elapsed: 182.170 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.003, elapsed: 0.489 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.713, system: 1.041, elapsed: 214.196 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.555, system: 0.035, elapsed: 4.238 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.019, system: 0.184, elapsed: 17.495 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.321, system: 0.018, elapsed: 1.250 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.960, system: 0.769, elapsed: 60.177 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.008, elapsed: 0.230 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.279, system: 0.357, elapsed: 1.091 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.031, system: 1.413, elapsed: 85.796 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.598, system: 0.044, elapsed: 1.879 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.092, system: 0.107, elapsed: 14.139 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.014, elapsed: 0.456 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.921, system: 0.673, elapsed: 33.045 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.003, elapsed: 0.195 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.223, system: 0.603, elapsed: 18.791 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.954, system: 1.475, elapsed: 69.315 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/560s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.776, system: 0.094, elapsed: 2.871 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.918, system: 0.435, elapsed: 15.106 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.023, elapsed: 0.356 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.986, system: 0.926, elapsed: 11.517 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.010, elapsed: 0.258 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.657, system: 1.530, elapsed: 30.903 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.781, system: 0.074, elapsed: 4.742 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.622, system: 0.112, elapsed: 33.152 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.018, elapsed: 1.244 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.900, system: 0.909, elapsed: 182.037 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.424 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.264, system: 1.143, elapsed: 222.880 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.564, system: 0.031, elapsed: 4.436 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.521, system: 0.051, elapsed: 27.219 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.016, elapsed: 1.209 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.951, system: 0.952, elapsed: 181.311 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.438 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.161, system: 0.292, elapsed: 1.778 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.252, system: 1.375, elapsed: 218.070 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.598, system: 0.042, elapsed: 4.332 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.646, system: 0.110, elapsed: 19.990 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.015, elapsed: 0.614 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.014, system: 0.807, elapsed: 24.490 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.194 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.129, system: 0.737, elapsed: 26.090 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 32.447, system: 1.749, elapsed: 77.023 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64