Last updated on 2026-02-02 02:50:39 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/574s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.556, system: 0.039, elapsed: 5.388 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.608, system: 0.115, elapsed: 24.594 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.019, elapsed: 1.189 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.000, system: 0.763, elapsed: 42.508 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.007, elapsed: 0.208 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.126, system: 0.967, elapsed: 75.276 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.867, system: 0.105, elapsed: 2.917 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.865, system: 0.378, elapsed: 12.774 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.263, system: 0.031, elapsed: 0.335 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.169, system: 1.017, elapsed: 18.162 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.013, elapsed: 0.470 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.927, system: 1.584, elapsed: 35.592 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.599, system: 0.046, elapsed: 4.712 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.584, system: 0.089, elapsed: 27.052 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.314, system: 0.017, elapsed: 1.656 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.043, system: 0.885, elapsed: 159.700 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.008, elapsed: 0.501 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.303, system: 0.363, elapsed: 2.166 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.737, system: 1.454, elapsed: 197.781 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.549, system: 0.035, elapsed: 4.141 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.489, system: 0.063, elapsed: 24.145 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.017, elapsed: 1.223 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.103, system: 0.929, elapsed: 181.506 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.005, elapsed: 0.464 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.278, system: 0.626, elapsed: 38.675 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.528, system: 1.708, elapsed: 251.808 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/585s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.829, system: 0.101, elapsed: 5.509 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.634, system: 0.156, elapsed: 31.751 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.020, elapsed: 1.878 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.926, system: 0.917, elapsed: 181.099 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.543 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.365, system: 1.227, elapsed: 223.022 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.619, system: 0.036, elapsed: 5.015 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.542, system: 0.057, elapsed: 26.084 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.017, elapsed: 1.229 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.897, system: 0.962, elapsed: 181.959 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.525 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.012, system: 1.097, elapsed: 216.401 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.591, system: 0.045, elapsed: 5.334 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.593, system: 0.115, elapsed: 28.151 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.209, system: 0.017, elapsed: 1.233 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.151, system: 0.770, elapsed: 52.748 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.005, elapsed: 0.202 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.220, system: 0.302, elapsed: 1.091 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.638, system: 1.284, elapsed: 90.410 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.688, system: 0.055, elapsed: 2.137 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.412, system: 0.148, elapsed: 12.715 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.017, elapsed: 0.678 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.219, system: 0.799, elapsed: 12.550 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.177 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 14.630, system: 0.938, elapsed: 14.821 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 35.106, system: 1.993, elapsed: 43.877 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64