Last updated on 2025-07-30 02:54:26 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CMF | 2 | 11 | |
| compdb | 10 | ||
| mmpca | 13 | ||
| scregclust | 1 | 3 | 9 |
Current CRAN status: NOTE: 2, OK: 11
Version: 1.0.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Felix Held <felix.held@gmail.com>’
The Description field contains
al. (2014) <arXiv:1312.5921>. The package can also be used to learn
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 10
Current CRAN status: NOTE: 13
Version: 2.0.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Felix Held <felix.held@gmail.com>’
The Description field contains
<arXiv:1911.04927>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: C++ specification
Result: NOTE
Specified C++14: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.0.3
Check: installed package size
Result: NOTE
installed size is 29.9Mb
sub-directories of 1Mb or more:
libs 29.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 0.2.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘plotting.R’
Flavor: r-patched-linux-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mouse.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz'
Content type 'text/html' length 13683 bytes (13 KB)
==================================================
downloaded 13 KB
Quitting from mouse.Rmd:38-77 [load-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─GEOquery::getGEO("GSE60361")
2. └─GEOquery:::getAndParseGSEMatrices(...)
3. └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
4. ├─xml2::read_html(url)
5. └─xml2:::read_html.default(url)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
9. └─xml2:::read_xml.character(...)
10. └─xml2:::read_xml.connection(...)
11. ├─base::open(x, "rb")
12. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mouse.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mouse.Rmd’
--- re-building ‘pbmc.Rmd’ using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB)
==================================================
downloaded 37.0 MB
|
| | 0%
|
|========= | 12%
|
|================== | 25%
|
|========================== | 38%
|
|=================================== | 50%
|
|============================================ | 62%
|
|==================================================== | 75%
|
|============================================================= | 88%
|
|======================================================================| 100%
trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
Content type 'application/octet-stream' length 15045381 bytes (14.3 MB)
==================================================
downloaded 14.3 MB
--- finished re-building ‘pbmc.Rmd’
SUMMARY: processing the following file failed:
‘mouse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 20.7Mb
sub-directories of 1Mb or more:
libs 20.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64