Last updated on 2026-01-01 01:51:07 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [107s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-01 11:12:09.874796: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:09.875057: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:09.878223: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:09.884229: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:09.895025: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:09.895147: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:09.897376: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:09.903288: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:09.909633: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:09.909783: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:09.914361: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:09.929168: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:09.929533: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:09.93478: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:09.934887: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:09.939245: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:09.954172: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:09.954598: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:09.974447: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:09.974576: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:09.978994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.013099: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.021983: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.02216: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.034702: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.111623: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:10.112679: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:10.144982: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.145188: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.148668: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.155937: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.162959: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.163128: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.167585: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.182281: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:10.182619: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:10.21386: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.214002: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.2164: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.222457: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.238946: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.239124: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.243554: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.258674: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:10.259042: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:10.274451: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.274569: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.276769: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.283096: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.294669: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.294836: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.299568: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.314313: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:10.314699: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:10.333569: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.33369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.335926: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.342078: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.352784: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.35296: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.357393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.371999: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:10.372381: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:10.397182: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.397349: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.3996: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.405616: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.416289: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.416445: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.42094: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.435859: embedding
> test_pipeop_isomap.R: 2026-01-01 11:12:10.436275: DONE
> test_pipeop_isomap.R: 2026-01-01 11:12:10.454515: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.45463: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.456701: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.462301: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.478217: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.478334: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.480527: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.48648: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 11:12:10.491765: Isomap START
> test_pipeop_isomap.R: 2026-01-01 11:12:10.491872: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 11:12:10.494026: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 11:12:10.499985: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [330s/365s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-31 18:58:20.692389: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:20.693874: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:20.701816: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:20.718015: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:20.746499: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:20.74675: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:20.752513: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:20.767235: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:20.832191: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:20.832605: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:20.845285: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:20.87974: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:20.88079: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:20.899008: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:20.89928: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:20.911053: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:20.945673: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:20.946866: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:21.047614: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:21.047877: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:21.066823: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:21.149714: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:21.173459: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:21.173882: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:21.204819: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:21.382231: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:21.385664: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:21.737701: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:21.737967: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:21.744049: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:21.760095: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:21.7808: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:21.781229: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:21.795324: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:21.830587: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:21.831681: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:22.091956: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.092217: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.098507: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.113752: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:22.143201: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.143583: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.155724: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.189555: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:22.190511: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:22.235816: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.236063: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.241898: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.256681: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:22.284279: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.284641: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.296769: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.330641: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:22.331614: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:22.379034: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.379282: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.395536: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.411533: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:22.442067: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.44246: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.455523: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.490335: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:22.491339: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:22.535168: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.535414: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.541177: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.555732: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:22.582764: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.58313: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.595167: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.629263: embedding
> test_pipeop_isomap.R: 2025-12-31 18:58:22.63031: DONE
> test_pipeop_isomap.R: 2025-12-31 18:58:22.679974: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.680215: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.685922: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.701057: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:22.745803: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.746044: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.751846: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.766496: Classical Scaling
> test_pipeop_isomap.R: 2025-12-31 18:58:22.7798: Isomap START
> test_pipeop_isomap.R: 2025-12-31 18:58:22.780039: constructing knn graph
> test_pipeop_isomap.R: 2025-12-31 18:58:22.785826: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-31 18:58:22.800651: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [298s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-29 23:58:08.39592: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.397001: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.415444: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.432775: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:08.48134: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.482003: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.493394: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.509237: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:08.541266: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.541932: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.557638: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.59562: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:08.597146: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:08.626392: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.626867: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.642581: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.696343: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:08.716096: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:08.84862: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.84923: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.870996: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.986946: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:09.040497: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.041379: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.080702: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.286405: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:09.29159: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:09.523103: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.523722: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.534337: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.557069: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:09.627172: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.62803: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.650044: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.694663: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:09.695734: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:09.91991: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.920563: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.932632: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.954441: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.031702: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.032621: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.055415: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.105656: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.107462: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.232661: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.233306: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.245937: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.273066: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.348642: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.349526: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.388423: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.437995: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.439157: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.560174: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.560797: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.571369: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.593617: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.668105: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.669004: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.687689: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.737882: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.739425: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.829189: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.829685: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.837691: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.858411: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.933407: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.934289: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.952716: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.995014: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.996929: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:11.142308: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.143: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.170818: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.194719: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:11.315518: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.316138: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.328614: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.351195: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:11.387378: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.38798: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.400866: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.419185: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13