Last updated on 2026-02-16 02:52:22 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/12m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.689, system: 0.073, elapsed: 4.249 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.180, system: 0.333, elapsed: 22.154 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.236, system: 0.034, elapsed: 0.962 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.586, system: 1.473, elapsed: 76.563 seconds]
Computing values for grid cells...
... done. [user: 0.205, system: 0.026, elapsed: 0.639 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.651, system: 2.469, elapsed: 107.943 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.792, system: 0.104, elapsed: 4.685 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.049, system: 0.325, elapsed: 17.439 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.235, system: 0.038, elapsed: 1.176 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.096, system: 1.972, elapsed: 111.628 seconds]
Computing values for grid cells...
... done. [user: 0.200, system: 0.017, elapsed: 0.563 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.089, system: 2.943, elapsed: 139.025 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.799, system: 0.117, elapsed: 4.473 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.351, system: 0.362, elapsed: 23.460 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.350, system: 0.036, elapsed: 1.688 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.213, system: 1.945, elapsed: 163.241 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.014, elapsed: 0.412 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
2 1 3 4
... computing probabilities from permuted values ...
... done. [user: 1.289, system: 0.457, elapsed: 2.464 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 23.034, system: 3.484, elapsed: 198.484 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.667, system: 0.061, elapsed: 3.795 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.202, system: 0.212, elapsed: 22.993 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.034, elapsed: 1.249 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.559, system: 3.132, elapsed: 144.826 seconds]
Computing values for grid cells...
... done. [user: 0.222, system: 0.032, elapsed: 0.777 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.839, system: 1.552, elapsed: 54.968 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 34.696, system: 5.670, elapsed: 232.061 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [121s/316s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.831, system: 0.105, elapsed: 5.325 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.259, system: 0.350, elapsed: 25.889 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.232, system: 0.031, elapsed: 1.174 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.418, system: 1.314, elapsed: 32.045 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.014, elapsed: 0.218 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.668, system: 2.222, elapsed: 67.580 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.780, system: 0.053, elapsed: 1.591 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.484, system: 0.217, elapsed: 11.590 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.405, system: 0.038, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.712, system: 1.156, elapsed: 9.276 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.009, elapsed: 0.223 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.587, system: 1.723, elapsed: 23.939 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.717, system: 0.061, elapsed: 1.729 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.612, system: 0.241, elapsed: 22.570 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.226, system: 0.035, elapsed: 1.210 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.740, system: 2.667, elapsed: 125.069 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.011, elapsed: 0.181 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.156, system: 0.322, elapsed: 1.383 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.650, system: 3.758, elapsed: 154.225 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.753, system: 0.081, elapsed: 2.434 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.880, system: 0.306, elapsed: 15.277 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.227, system: 0.029, elapsed: 0.757 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.358, system: 1.019, elapsed: 12.741 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.008, elapsed: 0.240 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 15.946, system: 1.253, elapsed: 20.715 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 37.116, system: 2.777, elapsed: 53.776 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64