Last updated on 2026-03-27 02:51:52 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/402s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.603, system: 0.051, elapsed: 2.226 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.481, system: 0.127, elapsed: 11.790 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.017, elapsed: 0.302 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.686, system: 0.720, elapsed: 35.861 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.175 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.746, system: 0.947, elapsed: 51.097 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.556, system: 0.040, elapsed: 2.047 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.699, system: 0.071, elapsed: 14.160 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.017, elapsed: 0.758 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.029, system: 0.849, elapsed: 120.917 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.004, elapsed: 0.186 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.240, system: 1.007, elapsed: 138.779 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.539, system: 0.029, elapsed: 2.356 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.576, system: 0.054, elapsed: 14.080 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.232, system: 0.017, elapsed: 0.965 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.790, system: 0.779, elapsed: 82.727 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.180 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.307, system: 0.248, elapsed: 1.169 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.316, system: 1.168, elapsed: 102.428 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.562, system: 0.033, elapsed: 2.278 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.756, system: 0.091, elapsed: 12.886 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.229, system: 0.016, elapsed: 1.149 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.927, system: 0.817, elapsed: 48.550 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.004, elapsed: 0.186 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.683, system: 0.649, elapsed: 37.084 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.038, system: 1.642, elapsed: 103.117 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/366s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.546, system: 0.040, elapsed: 1.754 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.648, system: 0.070, elapsed: 12.135 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.016, elapsed: 0.698 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.671, system: 0.682, elapsed: 37.648 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.205 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.872, system: 0.842, elapsed: 53.140 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.544, system: 0.030, elapsed: 1.929 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.458, system: 0.080, elapsed: 11.641 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.015, elapsed: 0.386 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.616, system: 0.654, elapsed: 10.903 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.002, elapsed: 0.165 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.571, system: 0.801, elapsed: 25.823 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.544, system: 0.033, elapsed: 1.825 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.523, system: 0.074, elapsed: 14.708 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.016, elapsed: 1.008 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.766, system: 0.851, elapsed: 128.652 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.273 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.268, system: 0.318, elapsed: 1.467 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.174, system: 1.322, elapsed: 148.857 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.533, system: 0.032, elapsed: 2.652 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.557, system: 0.056, elapsed: 16.344 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.017, elapsed: 1.114 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.524, system: 0.769, elapsed: 92.131 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.172 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.633, system: 0.631, elapsed: 17.872 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.317, system: 1.540, elapsed: 131.333 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64