CRAN Package Check Results for Maintainer ‘Sylvain Piry <sylvain.piry at inrae.fr>’

Last updated on 2026-02-16 02:52:22 CET.

Package ERROR OK
mapi 2 12

Package mapi

Current CRAN status: ERROR: 2, OK: 12

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [2m/12m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.689, system: 0.073, elapsed: 4.249 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 10.180, system: 0.333, elapsed: 22.154 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.236, system: 0.034, elapsed: 0.962 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.586, system: 1.473, elapsed: 76.563 seconds] Computing values for grid cells... ... done. [user: 0.205, system: 0.026, elapsed: 0.639 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.651, system: 2.469, elapsed: 107.943 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.792, system: 0.104, elapsed: 4.685 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 10.049, system: 0.325, elapsed: 17.439 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.235, system: 0.038, elapsed: 1.176 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.096, system: 1.972, elapsed: 111.628 seconds] Computing values for grid cells... ... done. [user: 0.200, system: 0.017, elapsed: 0.563 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.089, system: 2.943, elapsed: 139.025 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.799, system: 0.117, elapsed: 4.473 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 10.351, system: 0.362, elapsed: 23.460 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.350, system: 0.036, elapsed: 1.688 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.213, system: 1.945, elapsed: 163.241 seconds] Computing values for grid cells... ... done. [user: 0.183, system: 0.014, elapsed: 0.412 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 2 1 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.289, system: 0.457, elapsed: 2.464 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 23.034, system: 3.484, elapsed: 198.484 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.667, system: 0.061, elapsed: 3.795 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 10.202, system: 0.212, elapsed: 22.993 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.222, system: 0.034, elapsed: 1.249 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.559, system: 3.132, elapsed: 144.826 seconds] Computing values for grid cells... ... done. [user: 0.222, system: 0.032, elapsed: 0.777 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 12.839, system: 1.552, elapsed: 54.968 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 34.696, system: 5.670, elapsed: 232.061 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells Saving _problems/test-MAPI_Varicell-15.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512. Differences: `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-x86_64

Version: 1.1.4
Check: tests
Result: ERROR Running ‘testthat.R’ [121s/316s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.831, system: 0.105, elapsed: 5.325 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 10.259, system: 0.350, elapsed: 25.889 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.232, system: 0.031, elapsed: 1.174 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.418, system: 1.314, elapsed: 32.045 seconds] Computing values for grid cells... ... done. [user: 0.190, system: 0.014, elapsed: 0.218 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.668, system: 2.222, elapsed: 67.580 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.780, system: 0.053, elapsed: 1.591 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.484, system: 0.217, elapsed: 11.590 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.405, system: 0.038, elapsed: 0.254 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 9.712, system: 1.156, elapsed: 9.276 seconds] Computing values for grid cells... ... done. [user: 0.172, system: 0.009, elapsed: 0.223 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 22.587, system: 1.723, elapsed: 23.939 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.717, system: 0.061, elapsed: 1.729 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.612, system: 0.241, elapsed: 22.570 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.226, system: 0.035, elapsed: 1.210 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.740, system: 2.667, elapsed: 125.069 seconds] Computing values for grid cells... ... done. [user: 0.176, system: 0.011, elapsed: 0.181 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.156, system: 0.322, elapsed: 1.383 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 22.650, system: 3.758, elapsed: 154.225 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.753, system: 0.081, elapsed: 2.434 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.880, system: 0.306, elapsed: 15.277 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.227, system: 0.029, elapsed: 0.757 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 8.358, system: 1.019, elapsed: 12.741 seconds] Computing values for grid cells... ... done. [user: 0.185, system: 0.008, elapsed: 0.240 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 15.946, system: 1.253, elapsed: 20.715 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 37.116, system: 2.777, elapsed: 53.776 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells Saving _problems/test-MAPI_Varicell-15.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512. Differences: `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64