Last updated on 2026-02-16 03:53:22 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.808, system: 0.112, elapsed: 7.313 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.290, system: 0.354, elapsed: 32.612 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.238, system: 0.039, elapsed: 1.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.026, system: 1.897, elapsed: 182.256 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.020, elapsed: 0.697 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.280, system: 2.927, elapsed: 228.215 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.684, system: 0.073, elapsed: 5.606 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.959, system: 0.271, elapsed: 32.839 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.228, system: 0.033, elapsed: 1.342 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.454, system: 1.177, elapsed: 158.227 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.008, elapsed: 0.309 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.181, system: 1.927, elapsed: 200.848 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.535, system: 0.044, elapsed: 2.847 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.874, system: 0.134, elapsed: 17.929 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.342, system: 0.031, elapsed: 1.126 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.364, system: 3.309, elapsed: 147.461 seconds]
Computing values for grid cells...
... done. [user: 0.201, system: 0.023, elapsed: 0.531 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
2 1 4 3
... computing probabilities from permuted values ...
... done. [user: 1.347, system: 0.464, elapsed: 1.762 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.508, system: 4.494, elapsed: 174.538 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.800, system: 0.155, elapsed: 4.014 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.297, system: 0.307, elapsed: 21.804 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.231, system: 0.029, elapsed: 1.177 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.918, system: 3.014, elapsed: 139.298 seconds]
Computing values for grid cells...
... done. [user: 0.216, system: 0.032, elapsed: 0.618 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.817, system: 1.013, elapsed: 52.852 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 34.238, system: 5.326, elapsed: 223.440 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [121s/316s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.831, system: 0.105, elapsed: 5.325 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.259, system: 0.350, elapsed: 25.889 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.232, system: 0.031, elapsed: 1.174 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.418, system: 1.314, elapsed: 32.045 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.014, elapsed: 0.218 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.668, system: 2.222, elapsed: 67.580 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.780, system: 0.053, elapsed: 1.591 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.484, system: 0.217, elapsed: 11.590 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.405, system: 0.038, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.712, system: 1.156, elapsed: 9.276 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.009, elapsed: 0.223 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.587, system: 1.723, elapsed: 23.939 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.717, system: 0.061, elapsed: 1.729 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.612, system: 0.241, elapsed: 22.570 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.226, system: 0.035, elapsed: 1.210 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.740, system: 2.667, elapsed: 125.069 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.011, elapsed: 0.181 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.156, system: 0.322, elapsed: 1.383 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.650, system: 3.758, elapsed: 154.225 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.753, system: 0.081, elapsed: 2.434 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.880, system: 0.306, elapsed: 15.277 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.227, system: 0.029, elapsed: 0.757 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.358, system: 1.019, elapsed: 12.741 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.008, elapsed: 0.240 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 15.946, system: 1.253, elapsed: 20.715 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 37.116, system: 2.777, elapsed: 53.776 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64