CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2026-01-26 02:50:54 CET.

Package ERROR NOTE OK
arkdb 1 12
codemeta 13
codemetar 3 10
contentid 13
duckdbfs 13
earthdatalogin 13
EcoNetGen 2 11
EML 13
emld 13
gbifdb 2 11
knitcitations 13
minioclient 13
neonstore 10 3
piggyback 13
pmc 13
rdflib 13
rfishbase 13
RNeXML 13
sarsop 3 10
taxadb 10 3
taxalight 2 11
treebase 13
virtuoso 13

Package arkdb

Current CRAN status: NOTE: 1, OK: 12

Version: 0.0.18
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘arrow’ Flavor: r-oldrel-macos-x86_64

Version: 0.0.18
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘arrow’ Flavor: r-oldrel-macos-x86_64

Package codemeta

Current CRAN status: OK: 13

Package codemetar

Current CRAN status: ERROR: 3, OK: 10

Version: 0.3.6
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(codemetar) > > test_check("codemetar") Saving _problems/test-give_opinions-113.R [ FAIL 1 | WARN 0 | SKIP 14 | PASS 60 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • On CRAN (14): 'test-create_codemeta.R:3:3', 'test-extract_badges.R:19:3', 'test-frame.R:3:5', 'test-give_opinions.R:6:3', 'test-give_opinions.R:14:3', 'test-give_opinions.R:32:3', 'test-give_opinions.R:41:3', 'test-give_opinions.R:49:3', 'test-give_opinions.R:79:3', 'test-guess_metadata.R:3:3', 'test-guess_metadata.R:80:3', 'test-guess_metadata.R:95:3', 'test-guess_metadata.R:116:3', 'test-write_codemeta.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-give_opinions.R:113:3'): try_to_give_opinions_readme() works ── Expected `try_to_give_opinions_readme(package_file("dplyr", "DESCRIPTION"))` to be NULL. Differences: `actual` is an S3 object of class <data.frame>, a list `expected` is NULL [ FAIL 1 | WARN 0 | SKIP 14 | PASS 60 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.6
Check: tests
Result: ERROR Running ‘testthat.R’ [3s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(codemetar) > > test_check("codemetar") Saving _problems/test-give_opinions-113.R [ FAIL 1 | WARN 0 | SKIP 14 | PASS 60 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • On CRAN (14): 'test-create_codemeta.R:3:3', 'test-extract_badges.R:19:3', 'test-frame.R:3:5', 'test-give_opinions.R:6:3', 'test-give_opinions.R:14:3', 'test-give_opinions.R:32:3', 'test-give_opinions.R:41:3', 'test-give_opinions.R:49:3', 'test-give_opinions.R:79:3', 'test-guess_metadata.R:3:3', 'test-guess_metadata.R:80:3', 'test-guess_metadata.R:95:3', 'test-guess_metadata.R:116:3', 'test-write_codemeta.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-give_opinions.R:113:3'): try_to_give_opinions_readme() works ── Expected `try_to_give_opinions_readme(package_file("dplyr", "DESCRIPTION"))` to be NULL. Differences: `actual` is an S3 object of class <data.frame>, a list `expected` is NULL [ FAIL 1 | WARN 0 | SKIP 14 | PASS 60 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3.6
Check: tests
Result: ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(codemetar) > > test_check("codemetar") Saving _problems/test-give_opinions-113.R [ FAIL 1 | WARN 0 | SKIP 15 | PASS 55 ] ══ Skipped tests (15) ══════════════════════════════════════════════════════════ • On CRAN (14): 'test-create_codemeta.R:3:3', 'test-extract_badges.R:19:3', 'test-frame.R:3:5', 'test-give_opinions.R:6:3', 'test-give_opinions.R:14:3', 'test-give_opinions.R:32:3', 'test-give_opinions.R:41:3', 'test-give_opinions.R:49:3', 'test-give_opinions.R:79:3', 'test-guess_metadata.R:3:3', 'test-guess_metadata.R:80:3', 'test-guess_metadata.R:95:3', 'test-guess_metadata.R:116:3', 'test-write_codemeta.R:2:3' • nzchar(Sys.getenv("GITHUB_PAT")) is not TRUE (1): 'test-guess_metadata.R:61:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-give_opinions.R:113:3'): try_to_give_opinions_readme() works ── Expected `try_to_give_opinions_readme(package_file("dplyr", "DESCRIPTION"))` to be NULL. Differences: `actual` is an S3 object of class <data.frame>, a list `expected` is NULL [ FAIL 1 | WARN 0 | SKIP 15 | PASS 55 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Package contentid

Current CRAN status: OK: 13

Package duckdbfs

Current CRAN status: OK: 13

Package earthdatalogin

Current CRAN status: OK: 13

Package EcoNetGen

Current CRAN status: NOTE: 2, OK: 11

Version: 0.2.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The Description field contains <arXiv:1708.01242>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package EML

Current CRAN status: OK: 13

Package emld

Current CRAN status: OK: 13

Package gbifdb

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The BugReports field in DESCRIPTION has https://github.com/ropensci/gbifdb which should likely be https://github.com/ropensci/gbifdb/issues instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package knitcitations

Current CRAN status: OK: 13

Package minioclient

Current CRAN status: OK: 13

Package neonstore

Current CRAN status: NOTE: 10, OK: 3

Version: 0.5.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘neon_cloud.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package piggyback

Current CRAN status: OK: 13

Package pmc

Current CRAN status: OK: 13

Package rdflib

Current CRAN status: OK: 13

Package rfishbase

Current CRAN status: OK: 13

Package RNeXML

Current CRAN status: NOTE: 13

Version: 2.4.11
Check: Rd files
Result: NOTE checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package sarsop

Current CRAN status: NOTE: 3, OK: 10

Additional issues

musl

Version: 0.6.16
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: bin 4.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package taxadb

Current CRAN status: NOTE: 10, OK: 3

Version: 0.2.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘parse_schema.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package taxalight

Current CRAN status: NOTE: 2, OK: 11

Version: 0.1.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The BugReports field in DESCRIPTION has https://github.com/cboettig/taxalight which should likely be https://github.com/cboettig/taxalight/issues instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package treebase

Current CRAN status: OK: 13

Package virtuoso

Current CRAN status: OK: 13